RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 NOP56O00567 594 aaKnown RBP18.72■□□□□ 0.59
SF3A1-209ENST00000496189 GGPS1O95749 300 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 PURAQ00577 322 aaKnown RBP18.72■□□□□ 0.59
SF3A1-209ENST00000496189 ARHGAP1Q07960 439 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 ANKRD33Q7Z3H0 272 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 REXO1Q8N1G1 1221 aaKnown RBP18.72■□□□□ 0.59
SF3A1-209ENST00000496189 PPTC7Q8NI37 304 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 AFG1LQ8WV93 481 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 EMID1Q96A84 441 aaPredicted RBP18.72■□□□□ 0.59
SF3A1-209ENST00000496189 GPRASP2Q96D09 838 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 ANO3Q9BYT9 981 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 ZMYND12Q9H0C1 365 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 TMEM39AQ9NV64 488 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 TPCN1Q9ULQ1 816 aa18.72■□□□□ 0.59
SF3A1-209ENST00000496189 MAFGO15525 162 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 PFKFB2O60825 505 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 PPFIA3O75145 1194 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 RGS20O76081 388 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 MMP3P08254 477 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 UBA1P22314 1058 aaKnown RBP18.71■□□□□ 0.59
SF3A1-209ENST00000496189 PTGS1P23219 599 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 ICAM3P32942 547 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 ZNF76P36508 570 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 NLRP5P59047 1200 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 MRPS9P82933 396 aaKnown RBP18.71■□□□□ 0.59
SF3A1-209ENST00000496189 PKN1Q16512 942 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 CELF3Q5SZQ8 465 aaKnown RBP18.71■□□□□ 0.59
SF3A1-209ENST00000496189 TYW1BQ6NUM6 668 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 FAM177A1Q8N128 213 aaPredicted RBP18.71■□□□□ 0.59
SF3A1-209ENST00000496189 WASF1Q92558 559 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 ZFP91Q96JP5 570 aaPredicted RBP18.71■□□□□ 0.59
SF3A1-209ENST00000496189 SPATA33Q96N06 139 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 KATNAL1Q9BW62 490 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 LIMCH1Q9UPQ0 1083 aa18.71■□□□□ 0.59
SF3A1-209ENST00000496189 RAG1P15918 1043 aa18.7■□□□□ 0.58
SF3A1-209ENST00000496189 CHMP4BP1P59074 171 aa18.7■□□□□ 0.58
SF3A1-209ENST00000496189 SCRN1Q12765 414 aa18.7■□□□□ 0.58
SF3A1-209ENST00000496189 MTMR1Q13613 665 aa18.7■□□□□ 0.58
SF3A1-209ENST00000496189 FAM47CQ5HY64 1035 aa18.7■□□□□ 0.58
SF3A1-209ENST00000496189 ZSCAN31Q96LW9 406 aaPredicted RBP18.7■□□□□ 0.58
SF3A1-209ENST00000496189 PDLIM7Q9NR12 457 aa18.7■□□□□ 0.58
SF3A1-209ENST00000496189 SPATA31C2B4DYI2 1134 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 SUPT20HL2P0C7V6 817 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 CDK7P50613 346 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 PSMC6P62333 389 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 MYSM1Q5VVJ2 828 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 JAKMIP3Q5VZ66 844 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 SENP7Q9BQF6 1050 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 UBE2OQ9C0C9 1292 aaKnown RBP18.69■□□□□ 0.58
SF3A1-209ENST00000496189 VPS54Q9P1Q0 977 aa18.69■□□□□ 0.58
SF3A1-209ENST00000496189 COLQQ9Y215 455 aaPredicted RBP18.69■□□□□ 0.58
SF3A1-209ENST00000496189 PPFIA4O75335 1185 aa18.68■□□□□ 0.58
SF3A1-209ENST00000496189 MAGEA10P43363 369 aaPredicted RBP18.68■□□□□ 0.58
SF3A1-209ENST00000496189 MCM2P49736 904 aa18.68■□□□□ 0.58
SF3A1-209ENST00000496189 CLK2P49760 499 aaKnown RBP18.68■□□□□ 0.58
SF3A1-209ENST00000496189 MDM2Q00987 491 aaPredicted RBP18.68■□□□□ 0.58
SF3A1-209ENST00000496189 METTL7BQ6UX53 244 aa18.68■□□□□ 0.58
SF3A1-209ENST00000496189 SH2B1Q9NRF2 756 aaPredicted RBP18.68■□□□□ 0.58
SF3A1-209ENST00000496189 NOD1Q9Y239 953 aa18.68■□□□□ 0.58
SF3A1-209ENST00000496189 STK36Q9NRP7 1315 aa18.68■□□□□ 0.58
SF3A1-209ENST00000496189 CEP290O15078 2479 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 A0A1W2PPC1 479 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 SORBS3O60504 671 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 SREBF1P36956 1147 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 ARHGAP4P98171 946 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 PTPN11Q06124 597 aaPredicted RBP18.67■□□□□ 0.58
SF3A1-209ENST00000496189 FAAP100Q0VG06 881 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 ME3Q16798 604 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 GALNT17Q6IS24 598 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 NFRKBQ6P4R8 1299 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 CYFIP1Q7L576 1253 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 FAM126BQ8IXS8 530 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 SLC43A3Q8NBI5 491 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 GTF3C6Q969F1 213 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 PGBD1Q96JS3 809 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 MXRA8Q9BRK3 442 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 JADE2Q9NQC1 790 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 TMEM260Q9NX78 707 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 UBIAD1Q9Y5Z9 338 aa18.67■□□□□ 0.58
SF3A1-209ENST00000496189 KIAA0355O15063 1070 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 BMP8BP34820 402 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 NBPF20Q3BBV1 942 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 HSDL1Q3SXM5 330 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 CEP55Q53EZ4 464 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 C7orf31Q8N865 590 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 GDF15Q99988 308 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 SDF4Q9BRK5 362 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 TCEAL9Q9UHQ7 104 aa18.66■□□□□ 0.58
SF3A1-209ENST00000496189 ZNF215Q9UL58 517 aaPredicted RBP18.66■□□□□ 0.58
SF3A1-209ENST00000496189 TRIM43BA6NCK2 446 aa18.65■□□□□ 0.58
SF3A1-209ENST00000496189 ITGB5P18084 799 aa18.65■□□□□ 0.58
SF3A1-209ENST00000496189 SP2Q02086 613 aa18.65■□□□□ 0.58
SF3A1-209ENST00000496189 NECAB1Q8N987 351 aa18.65■□□□□ 0.58
SF3A1-209ENST00000496189 TRIM43Q96BQ3 446 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-209ENST00000496189 BRMS1Q9HCU9 246 aa18.65■□□□□ 0.58
SF3A1-209ENST00000496189 ORC3Q9UBD5 711 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-209ENST00000496189 PCDHA4Q9UN74 947 aa18.65■□□□□ 0.58
SF3A1-209ENST00000496189 MYH7BA7E2Y1 1941 aa18.64■□□□□ 0.58
SF3A1-209ENST00000496189 DNAH12Q6ZR08 3092 aa18.64■□□□□ 0.57
SF3A1-209ENST00000496189 ZNF286BP0CG31 522 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms