RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 AXDND1Q5T1B0 1012 aaPredicted RBP9.41□□□□□ -0.9
HDAC6-234ENST00000493923 IQCA1Q86XH1 822 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 USP38Q8NB14 1042 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 RGS22Q8NE09 1264 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 GPKOWQ92917 476 aaPredicted RBP eCLIP9.41□□□□□ -0.9
HDAC6-234ENST00000493923 MTMR8Q96EF0 704 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 KRT23Q9C075 422 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 ALDH8A1Q9H2A2 487 aaPredicted RBP9.41□□□□□ -0.9
HDAC6-234ENST00000493923 HIPK3Q9H422 1215 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 BCAS3Q9H6U6 928 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 YY1AP1Q9H869 796 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 IL23AQ9NPF7 189 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 CALCOCO1Q9P1Z2 691 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 YBX2Q9Y2T7 364 aaKnown RBP9.41□□□□□ -0.9
HDAC6-234ENST00000493923 PTPRSQ13332 1948 aa9.41□□□□□ -0.9
HDAC6-234ENST00000493923 ABCB11O95342 1321 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 MROH7Q68CQ1 1323 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 A6NJR5 290 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 KLRF2D3W0D1 207 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 TLR3O15455 904 aaKnown RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 CABYRO75952 493 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 TXNP10599 105 aaKnown RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 MYOGP15173 224 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 HOXA13P31271 388 aaPredicted RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 GRM4Q14833 912 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 PPP2R5BQ15173 497 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 TCTN1Q2MV58 587 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 IFIT1BQ5T764 474 aaKnown RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 SEPT14Q6ZU15 432 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 ZNF771Q7L3S4 317 aaPredicted RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 OTOP2Q7RTS6 562 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 GAS2L3Q86XJ1 694 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 FBXO11Q86XK2 927 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 MB21D2Q8IYB1 491 aaPredicted RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 DNERQ8NFT8 737 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 AFG1LQ8WV93 481 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 KAT2BQ92831 832 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 TNPO1Q92973 898 aaKnown RBP9.4□□□□□ -0.9
HDAC6-234ENST00000493923 TIGD1Q96MW7 591 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 PIGSQ96S52 555 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 PBX4Q9BYU1 374 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 PRDM6Q9NQX0 595 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 OGFRQ9NZT2 677 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 CTNNA3Q9UI47 895 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 TELO2Q9Y4R8 837 aa9.4□□□□□ -0.9
HDAC6-234ENST00000493923 BRWD1Q9NSI6 2320 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 PRRC2BQ5JSZ5 2229 aaKnown RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 RAD50Q92878 1312 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 LOC102724159A0A0B4J2E5 919 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 DHX16O60231 1041 aaKnown RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 ARHGEF15O94989 841 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 CFBP00751 764 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 TPM3P06753 285 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 TIE1P35590 1138 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 HSD17B4P51659 736 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 NUBP1P53384 320 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 RABGGTBP53611 331 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 HIC1Q14526 733 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 TTLL4Q14679 1199 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 GPNMBQ14956 572 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 PWP2Q15269 919 aaKnown RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 CCDC178Q5BJE1 867 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 MAFAQ8NHW3 353 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 IGDCC4Q8TDY8 1250 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 SCFD2Q8WU76 684 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 PIBF1Q8WXW3 757 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 HERVK_113Q902F9 699 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 DHX38Q92620 1227 aaKnown RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 RMDN3Q96TC7 470 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 UBAC1Q9BSL1 405 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 MTG1Q9BT17 334 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 MYL10Q9BUA6 226 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 LSG1Q9H089 658 aaKnown RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 NKX2-4Q9H2Z4 354 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 CNNM2Q9H8M5 875 aa9.39□□□□□ -0.91
HDAC6-234ENST00000493923 BCCIPQ9P287 314 aaKnown RBP eCLIP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 RBM8AQ9Y5S9 174 aaKnown RBP9.39□□□□□ -0.91
HDAC6-234ENST00000493923 TANC1Q9C0D5 1861 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 IFIT3O14879 490 aaKnown RBP9.38□□□□□ -0.91
HDAC6-234ENST00000493923 ZEB2O60315 1214 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 NR3C2P08235 984 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 MMP3P08254 477 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 CHMP4BP1P59074 171 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 NUCB2P80303 420 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 SP2Q02086 613 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 GHRHRQ02643 423 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 TROAPQ12815 778 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 ADGRE1Q14246 886 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 FAM47CQ5HY64 1035 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 SPRED2Q7Z698 418 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 DEFB128Q7Z7B8 93 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 HOMER1Q86YM7 354 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 RAB11FIP4Q86YS3 637 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 TMEM199Q8N511 208 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 MAP4K1Q92918 833 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 WNT8BQ93098 351 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 TIFAQ96CG3 184 aa9.38□□□□□ -0.91
HDAC6-234ENST00000493923 FAM212AQ96EL1 285 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms