RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ACSBG1Q96GR2 724 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 L3MBTL3Q96JM7 780 aaPredicted RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 XPO6Q96QU8 1125 aaKnown RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 FAM167BQ9BTA0 163 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 SLC12A4Q9UP95 1085 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ABCC12Q96J65 1359 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 LAMB4A4D0S4 1761 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 KCNK3O14649 394 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 SEC23AQ15436 765 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 MAEAQ7L5Y9 396 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 CACNA2D4Q7Z3S7 1137 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 SPICE1Q8N0Z3 855 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 HELBQ8NG08 1087 aaPredicted RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 TTLL11Q8NHH1 800 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 CNNM1Q9NRU3 951 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 PNMA2Q9UL42 364 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 DISP2A7MBM2 1401 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ANKRD33BA6NCL7 494 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 SNAP23O00161 211 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 MYBP10242 640 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 UBA7P41226 1012 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 VWA3BQ502W6 1294 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ERMARDQ5T6L9 678 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 MEI1Q5TIA1 1274 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 FAM114A1Q8IWE2 563 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ENAHQ8N8S7 591 aaPredicted RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ANKS4BQ8N8V4 417 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 RASGRP4Q8TDF6 673 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 BAP1Q92560 729 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ELAC2Q9BQ52 826 aaKnown RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 MTFR1LQ9H019 292 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 DDX47Q9H0S4 455 aaKnown RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 ETAA1Q9NY74 926 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 NOP53Q9NZM5 478 aaKnown RBP12.85□□□□□ -0.35
HDAC4-210ENST00000493582 LRP6O75581 1613 aa12.85□□□□□ -0.35
HDAC4-210ENST00000493582 GRID2IPA4D2P6 1211 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 DAPK3O43293 454 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 CABP4P57796 275 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 ICA1Q05084 483 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 AGBL2Q5U5Z8 902 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 HGSNATQ68CP4 663 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 PSMD1Q99460 953 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 PACSIN1Q9BY11 444 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 MYH7P12883 1935 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 MYH6P13533 1939 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 BICDL2A1A5D9 508 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 A8MUI8 341 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 SART1O43290 800 aaKnown RBP12.84□□□□□ -0.35
HDAC4-210ENST00000493582 MYBL1P10243 752 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 ZC3H6P61129 1189 aaKnown RBP12.84□□□□□ -0.35
HDAC4-210ENST00000493582 ARID5AQ03989 594 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 RIPK1Q13546 671 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 IFNL2Q8IZJ0 200 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 STAG2Q8N3U4 1231 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 ZNF317Q96PQ6 595 aaPredicted RBP12.84□□□□□ -0.35
HDAC4-210ENST00000493582 SEMA6BQ9H3T3 888 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 KBTBD4Q9NVX7 518 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 SWAP70Q9UH65 585 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 PHRF1Q9P1Y6 1649 aaKnown RBP12.84□□□□□ -0.35
HDAC4-210ENST00000493582 SLIT3O75094 1523 aa12.84□□□□□ -0.35
HDAC4-210ENST00000493582 CHN1P15882 459 aa12.83□□□□□ -0.35
HDAC4-210ENST00000493582 DHX9Q08211 1270 aaKnown RBP12.83□□□□□ -0.35
HDAC4-210ENST00000493582 TOM1L2Q6ZVM7 507 aa12.83□□□□□ -0.35
HDAC4-210ENST00000493582 NACAP1Q9BZK3 213 aa12.83□□□□□ -0.35
HDAC4-210ENST00000493582 ABCF3Q9NUQ8 709 aa12.83□□□□□ -0.35
HDAC4-210ENST00000493582 AKAP11Q9UKA4 1901 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 CYP27B1O15528 508 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 CEP104O60308 925 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 CAND2O75155 1236 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 CUL1Q13616 776 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 ZNF268Q14587 947 aaPredicted RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 NAB2Q15742 525 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 KIAA0753Q2KHM9 967 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 DTHD1Q6ZMT9 781 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 LRRC34Q8IZ02 419 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 SDR42E1Q8WUS8 393 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 NLRP3Q96P20 1036 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.83□□□□□ -0.364e-6■■■□□ 17.9
HDAC4-210ENST00000493582 FAM129AQ9BZQ8 928 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 TMEM60Q9H2L4 133 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 SLC5A4Q9NY91 659 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 AMACRQ9UHK6 382 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 TMEM59LQ9UK28 342 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 ADAMTS7Q9UKP4 1686 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 PKD1L3Q7Z443 1732 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 MMEP08473 750 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 ALDH5A1P51649 535 aaPredicted RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 ASIC1P78348 528 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 IFIT1BQ5T764 474 aaKnown RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 ARL6IP4Q66PJ3 421 aaKnown RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 TRPM8Q7Z2W7 1104 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 CATIPQ7Z7H3 387 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 ERICH1Q86X53 443 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 DNAAF5Q86Y56 855 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 KIF2BQ8N4N8 673 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 SRBD1Q8N5C6 995 aaKnown RBP12.83□□□□□ -0.36
HDAC4-210ENST00000493582 SELENOSQ9BQE4 189 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 GREM2Q9H772 168 aa12.83□□□□□ -0.36
HDAC4-210ENST00000493582 KCNMB3Q9NPA1 279 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms