RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 LENG9Q96B70 501 aa12□□□□□ -0.49
USP4-214ENST00000491791 RANBP17Q9H2T7 1088 aaKnown RBP12□□□□□ -0.49
USP4-214ENST00000491791 GOPCQ9HD26 462 aa12□□□□□ -0.49
USP4-214ENST00000491791 ZBTB21Q9ULJ3 1066 aa12□□□□□ -0.49
USP4-214ENST00000491791 USP17L15C9J2P7 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L13C9JLJ4 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L11C9JVI0 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L18D6R9N7 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L22D6RA61 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L17D6RBQ6 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L19D6RCP7 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L20D6RJB6 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 RAD17O75943 681 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 GDF11O95390 407 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 FGFR1OPO95684 399 aaKnown RBP11.99□□□□□ -0.49
USP4-214ENST00000491791 GYPCP04921 128 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 TPM1P09493 284 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 MUTP22033 750 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 PMS1P54277 932 aaKnown RBP11.99□□□□□ -0.49
USP4-214ENST00000491791 ASIC1P78348 528 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 ARHGAP4P98171 946 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L24Q0WX57 530 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 USP17L6PQ6QN14 398 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 FAM160B2Q86V87 743 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 SAMD3Q8N6K7 520 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 MB21D1Q8N884 522 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 KIAA0895Q8NCT3 520 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 SNX29Q8TEQ0 813 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 DNAJC19Q96DA6 116 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 CDK5RAP3Q96JB5 506 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 HHIPL1Q96JK4 782 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 P2RX7Q99572 595 aaKnown RBP11.99□□□□□ -0.49
USP4-214ENST00000491791 NUP58Q9BVL2 599 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 SRRTQ9BXP5 876 aaKnown RBP11.99□□□□□ -0.49
USP4-214ENST00000491791 PDCL3Q9H2J4 239 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 VCPKMTQ9H867 229 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 TRMT1Q9NXH9 659 aaKnown RBP11.99□□□□□ -0.49
USP4-214ENST00000491791 PRR12Q9ULL5 1215 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 PITPNM2Q9BZ72 1349 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 TRPM7Q96QT4 1865 aa11.99□□□□□ -0.49
USP4-214ENST00000491791 A0A1W2PQJ5 194 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 CAP2P40123 477 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 STAT2P52630 851 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 ADKP55263 362 aaKnown RBP11.98□□□□□ -0.49
USP4-214ENST00000491791 MCM6Q14566 821 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 ZNF662Q6ZS27 426 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 SAPCD2Q86UD0 394 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 ZC3H3Q8IXZ2 948 aaKnown RBP11.98□□□□□ -0.49
USP4-214ENST00000491791 ERGIC2Q96RQ1 377 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 DNAJC7Q99615 494 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 NUDT12Q9BQG2 462 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 POLR3CQ9BUI4 534 aaPredicted RBP11.98□□□□□ -0.49
USP4-214ENST00000491791 ZNF408Q9H9D4 720 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 CAPN11Q9UMQ6 739 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 ADGRG1Q9Y653 693 aa11.98□□□□□ -0.49
USP4-214ENST00000491791 THSD7BQ9C0I4 1608 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 POTEMA6NI47 508 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 TCP10L2B9ZVM9 353 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 ASNSP08243 561 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 CCDC175P0C221 793 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 PRKCSHP14314 528 aaPredicted RBP11.97□□□□□ -0.49
USP4-214ENST00000491791 RPA1P27694 616 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 CDK17Q00537 523 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 ECM1Q16610 540 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 ZCWPW2Q504Y3 356 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 HSP90AA4PQ58FG1 418 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 HAUS3Q68CZ6 603 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 ANKRD40Q6AI12 368 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 KCNK18Q7Z418 384 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 CSGALNACT2Q8N6G5 542 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 ERO1AQ96HE7 468 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 TRIM47Q96LD4 638 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 PLIN2Q99541 437 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 GLIS2Q9BZE0 524 aaPredicted RBP11.97□□□□□ -0.49
USP4-214ENST00000491791 EDEM3Q9BZQ6 932 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 TTYH3Q9C0H2 523 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 SEMA6BQ9H3T3 888 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 BMP2KQ9NSY1 1161 aaPredicted RBP11.97□□□□□ -0.49
USP4-214ENST00000491791 MAGEC2Q9UBF1 373 aaPredicted RBP11.97□□□□□ -0.49
USP4-214ENST00000491791 CNOT7Q9UIV1 285 aaKnown RBP11.97□□□□□ -0.49
USP4-214ENST00000491791 FEM1BQ9UK73 627 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 PNMA2Q9UL42 364 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 RABGAP1Q9Y3P9 1069 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 PCDHA2Q9Y5H9 948 aa11.97□□□□□ -0.49
USP4-214ENST00000491791 IGLV3-22A0A075B6J6 115 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 TRIM49BA6NDI0 452 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 CCDC85CA6NKD9 419 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 SPDYE3A6NKU9 549 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 PHF20L1A8MW92 1017 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 AOC2O75106 756 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 SLU7O95391 586 aaKnown RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 FCER1AP12319 257 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 CASP14P31944 242 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 CCT6AP40227 531 aaKnown RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 FXR1P51114 621 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP4-214ENST00000491791 MARSP56192 900 aaKnown RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 UBXN1Q04323 297 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 TUBB2AQ13885 445 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 MEA1Q16626 185 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 MIIPQ5JXC2 388 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms