RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ROBO1Q9Y6N7 1651 aa13.48□□□□□ -0.25
COL3A1-206ENST00000487010 GRID2IPA4D2P6 1211 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 ZNF233A6NK53 670 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 NDUFAB1O14561 156 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 PALMO75781 387 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 ERCC3P19447 782 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 NAB2Q15742 525 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 DDB1Q16531 1140 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 SFMBT2Q5VUG0 894 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 TMC4Q7Z404 712 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 REXO1Q8N1G1 1221 aaKnown RBP13.47□□□□□ -0.25
COL3A1-206ENST00000487010 PROM2Q8N271 834 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 IFT81Q8WYA0 676 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 PIK3R5Q8WYR1 880 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 RAD54LQ92698 747 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 NLRC4Q9NPP4 1024 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 TMEM260Q9NX78 707 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 SEC63Q9UGP8 760 aaKnown RBP13.47□□□□□ -0.25
COL3A1-206ENST00000487010 NAV1Q8NEY1 1877 aa13.47□□□□□ -0.25
COL3A1-206ENST00000487010 ZSCAN5CA6NGD5 496 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-206ENST00000487010 ZEB2O60315 1214 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 TLR2O60603 784 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 NOL4O94818 638 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 SMARCA1P28370 1054 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 ATP1A2P50993 1020 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 LRRC41Q15345 812 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 TMEM266Q2M3C6 531 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 BICDL1Q6ZP65 573 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 DDX12PQ92771 950 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 RNPC3Q96LT9 517 aaKnown RBP13.46□□□□□ -0.25
COL3A1-206ENST00000487010 LRRC27Q9C0I9 530 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 YY1AP1Q9H869 796 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 LUC7LQ9NQ29 371 aaKnown RBP13.46□□□□□ -0.25
COL3A1-206ENST00000487010 COL4A3BPQ9Y5P4 624 aa13.46□□□□□ -0.25
COL3A1-206ENST00000487010 ESYT2A0FGR8 921 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 ESYT3A0FGR9 886 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 LDHBP07195 334 aaKnown RBP13.46□□□□□ -0.26
COL3A1-206ENST00000487010 PDIA5Q14554 519 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 FAM83BQ5T0W9 1011 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 MEI1Q5TIA1 1274 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 USP17L2Q6R6M4 530 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 SPATS2Q86XZ4 545 aaKnown RBP13.46□□□□□ -0.26
COL3A1-206ENST00000487010 GLIS3Q8NEA6 775 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 TGFBRAP1Q8WUH2 860 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 CASKIN2Q8WXE0 1202 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 CDCA7Q9BWT1 371 aaPredicted RBP13.46□□□□□ -0.26
COL3A1-206ENST00000487010 VAT1LQ9HCJ6 419 aa13.46□□□□□ -0.26
COL3A1-206ENST00000487010 STRCQ7RTU9 1775 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 IRS2Q9Y4H2 1338 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 COL16A1Q07092 1604 aaPredicted RBP13.45□□□□□ -0.26
COL3A1-206ENST00000487010 BAG3O95817 575 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 FTCDO95954 541 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 KLRC1P26715 233 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 LSP1P33241 339 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 PPP4CP60510 307 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 FKBP3Q00688 224 aaKnown RBP13.45□□□□□ -0.26
COL3A1-206ENST00000487010 CDC37Q16543 378 aaPredicted RBP13.45□□□□□ -0.26
COL3A1-206ENST00000487010 TMEM119Q4V9L6 283 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 ZCWPW2Q504Y3 356 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 MYOCDQ8IZQ8 938 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 MARCH10Q8NA82 808 aaPredicted RBP13.45□□□□□ -0.26
COL3A1-206ENST00000487010 C1orf131Q8NDD1 294 aaKnown RBP13.45□□□□□ -0.26
COL3A1-206ENST00000487010 WHAMMQ8TF30 809 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 PIGSQ96S52 555 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 KRT12Q99456 494 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 NUDT12Q9BQG2 462 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 EPN3Q9H201 632 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 ATP6V0A2Q9Y487 856 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 PCDHGC5Q9Y5F6 944 aa13.45□□□□□ -0.26
COL3A1-206ENST00000487010 SLC37A4O43826 429 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 EDIL3O43854 480 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 HNRNPH1P31943 449 aaKnown RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 GUCY2FP51841 1108 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 SLC18A3Q16572 532 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 CCDC40Q4G0X9 1142 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 KRT79Q5XKE5 535 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 MCTP2Q6DN12 878 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 KCNK18Q7Z418 384 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 SNX29Q8TEQ0 813 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 INPP4AQ96PE3 977 aaPredicted RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 PAGR1Q9BTK6 254 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 LSM14BQ9BX40 385 aaKnown RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 RAB34Q9BZG1 259 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 ZNF287Q9HBT7 754 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 SAP30BPQ9UHR5 308 aaKnown RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 COL5A3P25940 1745 aaPredicted RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 POTEMA6NI47 508 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 TRAF5O00463 557 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 NR1D1P20393 614 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 CDK8P49336 464 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 DNA2P51530 1060 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 POLR2FP61218 127 aaKnown RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 GSTO1P78417 241 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 DIXDC1Q155Q3 683 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 SWT1Q5T5J6 900 aaKnown RBP13.44□□□□□ -0.26
COL3A1-206ENST00000487010 FBXW10Q5XX13 1052 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 TBC1D9BQ66K14 1250 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 CERS3Q8IU89 383 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 NEDD1Q8NHV4 660 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 WDR66Q8TBY9 1149 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 158.9 ms