RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 DBNDD1Q9H9R9 158 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 CDC23Q9UJX2 597 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ABT1Q9ULW3 272 aaKnown RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ERBB3P21860 1342 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 SYNMO15061 1565 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 STAM2O75886 525 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 S100BP04271 92 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 TMEM191BP0C7N4 346 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 PHKA1P46020 1223 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 NOP14P78316 857 aaKnown RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 PNOCQ13519 176 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 MMS22LQ6ZRQ5 1243 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 PDZD4Q76G19 769 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 FAM178BQ8IXR5 827 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 EAF2Q96CJ1 260 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 TRIM15Q9C019 465 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 KANSL2Q9H9L4 492 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 HESX1Q9UBX0 185 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 EIF3CLB5ME19 914 aaKnown RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 CCDC159P0C7I6 412 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 RANBP1P43487 201 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 EIF3CQ99613 913 aaKnown RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 PANK4Q9NVE7 773 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 TEKT2Q9UIF3 430 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ADCY9O60503 1353 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 PALLDQ8WX93 1383 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ZCCHC11Q5TAX3 1644 aaKnown RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 A0A0D9SFI3 127 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 SORBS3O60504 671 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 GOLGA8HP0CJ92 632 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 CDC25BP30305 580 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 RINT1Q6NUQ1 792 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 KIAA1468Q9P260 1216 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ANGPTL3Q9Y5C1 460 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 TARBP1Q13395 1621 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ATG16L1Q676U5 607 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 MIS18BP1Q6P0N0 1132 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 GPIHBP1Q8IV16 184 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 MAP7D3Q8IWC1 876 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 TTLL6Q8N841 843 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 CDHR1Q96JP9 859 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ST7Q9NRC1 585 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ROBO2Q9HCK4 1378 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 CTNND1O60716 968 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 CCND2P30279 289 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ABCD1P33897 745 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 MYSM1Q5VVJ2 828 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 CIAPIN1Q6FI81 312 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 RAPH1Q70E73 1250 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 MAGEF1Q9HAY2 307 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ATG3Q9NT62 314 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 JAK2O60674 1132 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 PFKFB2O60825 505 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 IGBP1P78318 339 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 BFSP1Q12934 665 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ZC3H15Q8WU90 426 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 PPP1R13BQ96KQ4 1090 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 SLC24A3Q9HC58 644 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 LRFN2Q9ULH4 789 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 TTC37Q6PGP7 1564 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 USP17L3A6NCW0 530 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 USP17L4A6NCW7 530 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 LRRIQ4A6NIV6 560 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 LAD1O00515 517 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 TLR3O15455 904 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 TTI1O43156 1089 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 SAT1P21673 171 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 HIBCHQ6NVY1 386 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 USP17L1Q7RTZ2 530 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 GPKOWQ92917 476 aaPredicted RBP eCLIP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 MASTLQ96GX5 879 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 TMEM63CQ9P1W3 806 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 CAPN11Q9UMQ6 739 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 NOC2LQ9Y3T9 749 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 DAAM1Q9Y4D1 1078 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 BRD2P25440 801 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 GRAPQ13588 217 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 ZC3H18Q86VM9 953 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 KSR1Q8IVT5 923 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 GRAPLQ8TC17 118 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 PNMA3Q9UL41 463 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 MAPK13O15264 365 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 SEC31AO94979 1220 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 RDH13Q8NBN7 331 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 EDC3Q96F86 508 aaKnown RBP9.55□□□□□ -0.88
SYNE1-224ENST00000478916 FAM8A1Q9UBU6 413 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 PHLPP2Q6ZVD8 1323 aa9.55□□□□□ -0.88
SYNE1-224ENST00000478916 HEG1Q9ULI3 1381 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 CHUKO15111 745 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 GFAPP14136 432 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 PDE6CP51160 858 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SKOR1P84550 965 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 TADA3O75528 432 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 FGAP02671 866 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 PRPSAP1Q14558 356 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ALS2CLQ60I27 953 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ADAT2Q7Z6V5 191 aaKnown RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 FAM186BQ8IYM0 893 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 UPF3AQ9H1J1 476 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms