RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 MROH7Q68CQ1 1323 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 Q7L0L9 218 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 FAM126BQ8IXS8 530 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 NECAB1Q8N987 351 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 OR6J1Q8NGC5 347 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 ZMYND12Q9H0C1 365 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 GLT8D2Q9H1C3 349 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 UPF2Q9HAU5 1272 aaKnown RBP17.34■□□□□ 0.37
LIMS1-212ENST00000474038 DDX41Q9UJV9 622 aaKnown RBP17.34■□□□□ 0.37
LIMS1-212ENST00000474038 TBX21Q9UL17 535 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 SCN10AQ9Y5Y9 1956 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 GRIN2DO15399 1336 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 ADAMTS3O15072 1205 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 ZEB2O60315 1214 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 DEXIO95424 95 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 CLK2P49760 499 aaKnown RBP17.33■□□□□ 0.36
LIMS1-212ENST00000474038 XRRA1Q6P2D8 792 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 CCDC12Q8WUD4 166 aaPredicted RBP17.33■□□□□ 0.36
LIMS1-212ENST00000474038 GTF3C6Q969F1 213 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 TMEM260Q9NX78 707 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 VPS54Q9P1Q0 977 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 MRVI1Q9Y6F6 885 aa17.33■□□□□ 0.36
LIMS1-212ENST00000474038 DTNBO60941 627 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 STAM2O75886 525 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 CABYRO75952 493 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 CDKL5O76039 1030 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 CTDNEP1O95476 244 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 FOSP01100 380 aaPredicted RBP17.32■□□□□ 0.36
LIMS1-212ENST00000474038 PSMC6P62333 389 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 ARHGAP1Q07960 439 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 ITGA7Q13683 1181 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 KCNV1Q6PIU1 500 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 SLC43A3Q8NBI5 491 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 PGBD1Q96JS3 809 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 INPP4AQ96PE3 977 aaPredicted RBP17.32■□□□□ 0.36
LIMS1-212ENST00000474038 C6orf50Q9HD87 102 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 SH3GLB2Q9NR46 395 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 RTEL1Q9NZ71 1219 aa17.32■□□□□ 0.36
LIMS1-212ENST00000474038 A6NJR5 290 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 TIMP1P01033 207 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 GH1P01241 217 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 CPT1AP50416 773 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 SP2Q02086 613 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 FPGSQ05932 587 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 GPR153Q6NV75 609 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 DEFB123Q8N688 67 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 CCDC148Q8NFR7 591 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 TBC1D32Q96NH3 1257 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 AIFM3Q96NN9 605 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 ANO3Q9BYT9 981 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 BACH2Q9BYV9 841 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 EHMT1Q9H9B1 1298 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 LIMCH1Q9UPQ0 1083 aa17.31■□□□□ 0.36
LIMS1-212ENST00000474038 STK36Q9NRP7 1315 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 SPATA31C2B4DYI2 1134 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 TLR3O15455 904 aaKnown RBP17.3■□□□□ 0.36
LIMS1-212ENST00000474038 CD4P01730 458 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 MYL3P08590 195 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 TGFB3P10600 412 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 GNA11P29992 359 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 ICAM3P32942 547 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 SEMA3FQ13275 785 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 AP3B2Q13367 1082 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 RABEP1Q15276 862 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 GNPTABQ3T906 1256 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 JAKMIP3Q5VZ66 844 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 REXO1Q8N1G1 1221 aaKnown RBP17.3■□□□□ 0.36
LIMS1-212ENST00000474038 PPP1R12CQ9BZL4 782 aa17.3■□□□□ 0.36
LIMS1-212ENST00000474038 TRIP12Q14669 1992 aaPredicted RBP17.29■□□□□ 0.36
LIMS1-212ENST00000474038 FIBPO43427 364 aa17.29■□□□□ 0.36
LIMS1-212ENST00000474038 UBA1P22314 1058 aaKnown RBP17.29■□□□□ 0.36
LIMS1-212ENST00000474038 PURAQ00577 322 aaKnown RBP17.29■□□□□ 0.36
LIMS1-212ENST00000474038 ST3GAL1Q11201 340 aa17.29■□□□□ 0.36
LIMS1-212ENST00000474038 BRDTQ58F21 947 aaPredicted RBP17.29■□□□□ 0.36
LIMS1-212ENST00000474038 DHX37Q8IY37 1157 aaKnown RBP17.29■□□□□ 0.36
LIMS1-212ENST00000474038 AFG1LQ8WV93 481 aa17.29■□□□□ 0.36
LIMS1-212ENST00000474038 EMID1Q96A84 441 aaPredicted RBP17.29■□□□□ 0.36
LIMS1-212ENST00000474038 POLR3EQ9NVU0 708 aa17.29■□□□□ 0.36
LIMS1-212ENST00000474038 UBIAD1Q9Y5Z9 338 aa17.29■□□□□ 0.36
LIMS1-212ENST00000474038 KAT6AQ92794 2004 aa17.29■□□□□ 0.36
LIMS1-212ENST00000474038 WDR81Q562E7 1941 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 SORBS3O60504 671 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 B4GALT4O60513 344 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 GGPS1O95749 300 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 FDPSP14324 419 aaKnown RBP17.28■□□□□ 0.36
LIMS1-212ENST00000474038 ITGB5P18084 799 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 SREBF1P36956 1147 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 NLRP5P59047 1200 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 LAMC2Q13753 1193 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 CELF3Q5SZQ8 465 aaKnown RBP17.28■□□□□ 0.36
LIMS1-212ENST00000474038 MYSM1Q5VVJ2 828 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 MFSD5Q6N075 450 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 NLRX1Q86UT6 975 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 NSUN7Q8NE18 718 aaKnown RBP17.28■□□□□ 0.36
LIMS1-212ENST00000474038 BICD2Q8TD16 824 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 RASGRP4Q8TDF6 673 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 PPP1R13LQ8WUF5 828 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 GPRASP2Q96D09 838 aa17.28■□□□□ 0.36
LIMS1-212ENST00000474038 RNPC3Q96LT9 517 aaKnown RBP17.28■□□□□ 0.36
LIMS1-212ENST00000474038 TRPV6Q9H1D0 765 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms