RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SYNRGQ9UMZ2 1314 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 KIAA0100Q14667 2235 aaKnown RBP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 CCDC194A0A1B0GVG4 234 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 DNM1LO00429 736 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 FIBPO43427 364 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 FARP2O94887 1054 aaPredicted RBP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 C6orf222P0C671 652 aaPredicted RBP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 USP11P51784 963 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 GUCY1B3Q02153 619 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 SEMA3FQ13275 785 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 NONOQ15233 471 aaKnown RBP eCLIP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 SAFBQ15424 915 aaKnown RBP eCLIP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 CEP55Q53EZ4 464 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 DIS3L2Q8IYB7 885 aaKnown RBP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 CYP2W1Q8TAV3 490 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 TBCKQ8TEA7 893 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 COPS5Q92905 334 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 INTS4Q96HW7 963 aaKnown RBP13.62□□□□□ -0.23
VPS13D-204ENST00000469054 CDHR1Q96JP9 859 aa13.62□□□□□ -0.23
VPS13D-204ENST00000469054 BRCA2P51587 3418 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 RBBP6Q7Z6E9 1792 aaKnown RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 MYADML2A6NDP7 307 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 BTBD18B2RXH4 712 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 FAM86B1E9PN63 330 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 MEIS1O00470 390 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 CTAGE5O15320 804 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 EDIL3O43854 480 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 GH1P01241 217 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 FAM86B2P0C5J1 330 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 CST5P28325 142 aaPredicted RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 CIITAP33076 1130 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 IRX5P78411 483 aaPredicted RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 SP2Q02086 613 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 NR5A1Q13285 461 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 MTMR1Q13613 665 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 NEDD9Q14511 834 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 FSCN1Q16658 493 aaKnown RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 GNASQ5JWF2 1037 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 PIK3AP1Q6ZUJ8 805 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 UBE2Q1Q7Z7E8 422 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 PCSK9Q8NBP7 692 aaKnown RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 OR6J1Q8NGC5 347 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 TNFRSF25Q93038 417 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 PAWRQ96IZ0 340 aaKnown RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 SENP7Q9BQF6 1050 aa13.61□□□□□ -0.23
VPS13D-204ENST00000469054 TSEN34Q9BSV6 310 aaKnown RBP13.61□□□□□ -0.23
VPS13D-204ENST00000469054 KBTBD13C9JR72 458 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 UBA1P22314 1058 aaKnown RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 BEX3Q00994 111 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 ARHGAP1Q07960 439 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 LAMC2Q13753 1193 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 INF2Q27J81 1249 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 EARS2Q5JPH6 523 aaKnown RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 CELF3Q5SZQ8 465 aaKnown RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 CCSAPQ6IQ19 270 aaPredicted RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 NIPA1Q7RTP0 329 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 NECAB2Q7Z6G3 386 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 DHX37Q8IY37 1157 aaKnown RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 DIS3LQ8TF46 1054 aaKnown RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 EMID1Q96A84 441 aaPredicted RBP13.6□□□□□ -0.23
VPS13D-204ENST00000469054 KCNH7Q9NS40 1196 aa13.6□□□□□ -0.23
VPS13D-204ENST00000469054 IGLV3-22A0A075B6J6 115 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 MOXD2PA6NHM9 499 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 ZEB2O60315 1214 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 ATP9AO75110 1047 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 GGPS1O95749 300 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 ARP10275 920 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 COL6A1P12109 1028 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 KCNA2P16389 499 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 RGS19P49795 217 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 CPT1AP50416 773 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 KCNA10Q16322 511 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 BRDTQ58F21 947 aaPredicted RBP13.59□□□□□ -0.23
VPS13D-204ENST00000469054 MYSM1Q5VVJ2 828 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 LARP1BQ659C4 914 aaKnown RBP13.59□□□□□ -0.23
VPS13D-204ENST00000469054 METTL7BQ6UX53 244 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 NEK8Q86SG6 692 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 PLA2G4DQ86XP0 818 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 AFG1LQ8WV93 481 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 FOXP1Q9H334 677 aaPredicted RBP13.59□□□□□ -0.23
VPS13D-204ENST00000469054 C11orf49Q9H6J7 331 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 MLXIPQ9HAP2 919 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 PHF24Q9UPV7 400 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 MCM3APO60318 1980 aa13.59□□□□□ -0.23
VPS13D-204ENST00000469054 CYP3A7-CYP3A51PA0A087WV96 503 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 A6NJR5 290 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 H3BQV1 296 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 ASGR1P07306 291 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 CYP3A7P24462 503 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 SETQ01105 290 aaPredicted RBP13.58□□□□□ -0.24
VPS13D-204ENST00000469054 LETM2Q2VYF4 491 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 PRR16Q569H4 304 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 IFFO2Q5TF58 517 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 MOXD1Q6UVY6 613 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 CYFIP1Q7L576 1253 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 GIMAP8Q8ND71 665 aaPredicted RBP13.58□□□□□ -0.24
VPS13D-204ENST00000469054 PPTC7Q8NI37 304 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 LENG9Q96B70 501 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 SPATA33Q96N06 139 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 SENP6Q9GZR1 1112 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms