RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SAPCD2Q86UD0 394 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 STK11IPQ8N1F8 1099 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 TTLL11Q8NHH1 800 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 JARID2Q92833 1246 aaPredicted RBP9.23□□□□□ -0.93
USP54-208ENST00000461520 HHIPL1Q96JK4 782 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 GLIS2Q9BZE0 524 aaPredicted RBP9.23□□□□□ -0.93
USP54-208ENST00000461520 XDHP47989 1333 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 FANCIQ9NVI1 1328 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 RTL9Q8NET4 1388 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 SHTN1A0MZ66 631 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 PRAMEF27A3QJZ7 478 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 CD8BP10966 210 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 MAP2K2P36507 400 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 CDK8P49336 464 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 PLCL1Q15111 1095 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 CCDC85BQ15834 202 aaPredicted RBP9.22□□□□□ -0.93
USP54-208ENST00000461520 CWF19L2Q2TBE0 894 aaKnown RBP9.22□□□□□ -0.93
USP54-208ENST00000461520 SCARA3Q6AZY7 606 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 G2E3Q7L622 706 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 GAL3ST3Q96A11 431 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 MISP3Q96FF7 219 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 PLPPR2Q96GM1 343 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 ZNF408Q9H9D4 720 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 KCNQ5Q9NR82 932 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 ZNF609O15014 1411 aa9.22□□□□□ -0.93
USP54-208ENST00000461520 VAMP4O75379 141 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 CEACAM5P06731 702 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 GCKRQ14397 625 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 IFI16Q16666 785 aaKnown RBP9.21□□□□□ -0.94
USP54-208ENST00000461520 TBC1D10BQ4KMP7 808 aaPredicted RBP9.21□□□□□ -0.94
USP54-208ENST00000461520 UBE3BQ7Z3V4 1068 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 AGBL3Q8NEM8 1001 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 LINS1Q8NG48 757 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 PLA2G12BQ9BX93 195 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 MYH16Q9H6N6 1097 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 GREM2Q9H772 168 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 MKNK2Q9HBH9 465 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 MINPP1Q9UNW1 487 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 PCDHB5Q9Y5E4 795 aa9.21□□□□□ -0.94
USP54-208ENST00000461520 IGHMBP2P38935 993 aaKnown RBP9.2□□□□□ -0.94
USP54-208ENST00000461520 TXKP42681 527 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 EXOSC9Q06265 439 aaKnown RBP9.2□□□□□ -0.94
USP54-208ENST00000461520 MAP3K11Q16584 847 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 CYFIP1Q7L576 1253 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 KRT26Q7Z3Y9 468 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 USP48Q86UV5 1035 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 ZNF507Q8TCN5 953 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 DNAAF4Q8WXU2 420 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 DCPSQ96C86 337 aaKnown RBP9.2□□□□□ -0.94
USP54-208ENST00000461520 MCOLN1Q9GZU1 580 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 FBRSQ9HAH7 460 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 VAV3Q9UKW4 847 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 MED23Q9ULK4 1368 aa9.2□□□□□ -0.94
USP54-208ENST00000461520 CSF1RP07333 972 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 RGS19P49795 217 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 CCT4P50991 539 aaKnown RBP9.19□□□□□ -0.94
USP54-208ENST00000461520 CASP7P55210 303 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 ZNF280AP59817 542 aaPredicted RBP9.19□□□□□ -0.94
USP54-208ENST00000461520 PRKCQQ04759 706 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 ZNF792Q3KQV3 632 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 MEI1Q5TIA1 1274 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 ARMCX6Q7L4S7 300 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 HDXQ7Z353 690 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 KRTAP19-1Q8IUB9 90 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 GMLQ99445 158 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 GOLGA2P5Q9HBQ8 144 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 PARP2Q9UGN5 583 aa9.19□□□□□ -0.94
USP54-208ENST00000461520 POLR2AP24928 1970 aaKnown RBP9.19□□□□□ -0.94
USP54-208ENST00000461520 TMEM265A0A087WTH1 108 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 CA12O43570 354 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 EOMESO95936 686 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 HUNKP57058 714 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 NOGQ13253 232 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 WIPI1Q5MNZ9 446 aaPredicted RBP9.18□□□□□ -0.94
USP54-208ENST00000461520 C2orf69Q8N8R5 385 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 KCT2Q8NC54 265 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 HRASLS5Q96KN8 279 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 MPHOSPH8Q99549 860 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 ANKRD2Q9GZV1 360 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 COA1Q9GZY4 146 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 GBA2Q9HCG7 927 aaPredicted RBP9.18□□□□□ -0.94
USP54-208ENST00000461520 GGA3Q9NZ52 723 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 GTF2IRD1Q9UHL9 959 aa9.18□□□□□ -0.94
USP54-208ENST00000461520 PDE4DIPQ5VU43 2346 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 SCN9AQ15858 1988 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 ZNF804BA4D1E1 1349 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 MYO3BQ8WXR4 1341 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 PITPNM2Q9BZ72 1349 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 WTIPA6NIX2 430 aaPredicted RBP9.17□□□□□ -0.94
USP54-208ENST00000461520 ADM5C9JUS6 153 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 MMP14P50281 582 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 SEPT6Q14141 434 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 NKG7Q16617 165 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 BEND3Q5T5X7 828 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 STRIP1Q5VSL9 837 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 DLK2Q6UY11 383 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 DNAJC14Q6Y2X3 702 aaPredicted RBP9.17□□□□□ -0.94
USP54-208ENST00000461520 NPAS4Q8IUM7 802 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 FAM9BQ8IZU0 186 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 WNT10AQ9GZT5 417 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms