RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 CDK7P50613 346 aa22.85■■□□□ 1.25
COL9A3-202ENST00000452372 EPHB4P54760 987 aa22.85■■□□□ 1.25
COL9A3-202ENST00000452372 MRPS9P82933 396 aaKnown RBP22.85■■□□□ 1.25
COL9A3-202ENST00000452372 GNASQ5JWF2 1037 aa22.85■■□□□ 1.25
COL9A3-202ENST00000452372 PCNX4Q63HM2 1172 aa22.85■■□□□ 1.25
COL9A3-202ENST00000452372 PCSK9Q8NBP7 692 aaKnown RBP22.85■■□□□ 1.25
COL9A3-202ENST00000452372 CCDC148Q8NFR7 591 aa22.85■■□□□ 1.25
COL9A3-202ENST00000452372 TOX2Q96NM4 488 aa22.85■■□□□ 1.25
COL9A3-202ENST00000452372 PQBP1O60828 265 aaKnown RBP22.84■■□□□ 1.25
COL9A3-202ENST00000452372 GNA11P29992 359 aa22.84■■□□□ 1.25
COL9A3-202ENST00000452372 FAM109BQ6ICB4 259 aaPredicted RBP22.84■■□□□ 1.25
COL9A3-202ENST00000452372 KCNV1Q6PIU1 500 aa22.84■■□□□ 1.25
COL9A3-202ENST00000452372 STARD7Q9NQZ5 370 aa22.84■■□□□ 1.25
COL9A3-202ENST00000452372 VPS54Q9P1Q0 977 aa22.84■■□□□ 1.25
COL9A3-202ENST00000452372 DDX41Q9UJV9 622 aaKnown RBP22.84■■□□□ 1.25
COL9A3-202ENST00000452372 STK36Q9NRP7 1315 aa22.83■■□□□ 1.25
COL9A3-202ENST00000452372 ASGR1P07306 291 aa22.83■■□□□ 1.25
COL9A3-202ENST00000452372 TGFB3P10600 412 aa22.83■■□□□ 1.25
COL9A3-202ENST00000452372 AP3B2Q13367 1082 aa22.83■■□□□ 1.25
COL9A3-202ENST00000452372 FSCN1Q16658 493 aaKnown RBP22.83■■□□□ 1.25
COL9A3-202ENST00000452372 ZFP91Q96JP5 570 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-202ENST00000452372 INPP4AQ96PE3 977 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-202ENST00000452372 EHMT1Q9H9B1 1298 aa22.83■■□□□ 1.25
COL9A3-202ENST00000452372 MRVI1Q9Y6F6 885 aa22.83■■□□□ 1.25
COL9A3-202ENST00000452372 ELP1O95163 1332 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 BEX3Q00994 111 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 LY6KQ17RY6 165 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 GNPTABQ3T906 1256 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 MCTP2Q6DN12 878 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 FAM177A1Q8N128 213 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-202ENST00000452372 OR6J1Q8NGC5 347 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 BICD2Q8TD16 824 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 COPS5Q92905 334 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 ZSCAN31Q96LW9 406 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-202ENST00000452372 STXBP5LQ9Y2K9 1186 aa22.82■■□□□ 1.24
COL9A3-202ENST00000452372 GH1P01241 217 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 ICAM3P32942 547 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 AIFM3Q96NN9 605 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 ANO3Q9BYT9 981 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 TMEM39AQ9NV64 488 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 TMEM260Q9NX78 707 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 RTEL1Q9NZ71 1219 aa22.81■■□□□ 1.24
COL9A3-202ENST00000452372 ADAMTS3O15072 1205 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 ST18O60284 1047 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 ZEB2O60315 1214 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 CPT1AP50416 773 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 NLRP5P59047 1200 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 JAKMIP3Q5VZ66 844 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 REXO1Q8N1G1 1221 aaKnown RBP22.8■■□□□ 1.24
COL9A3-202ENST00000452372 SLC17A8Q8NDX2 589 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 NSUN7Q8NE18 718 aaKnown RBP22.8■■□□□ 1.24
COL9A3-202ENST00000452372 PGBD1Q96JS3 809 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 GUCD1Q96NT3 240 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 ORC3Q9UBD5 711 aaPredicted RBP22.8■■□□□ 1.24
COL9A3-202ENST00000452372 TBX21Q9UL17 535 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 MYH7BA7E2Y1 1941 aa22.8■■□□□ 1.24
COL9A3-202ENST00000452372 A6NJR5 290 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 DCDC2CA8MYV0 355 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 SPATA31C2B4DYI2 1134 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 FDPSP14324 419 aaKnown RBP22.79■■□□□ 1.24
COL9A3-202ENST00000452372 ARHGAP1Q07960 439 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 ST3GAL1Q11201 340 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 NLRX1Q86UT6 975 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 WASF1Q92558 559 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 GLT1D1Q96MS3 346 aa22.79■■□□□ 1.24
COL9A3-202ENST00000452372 SH2B1Q9NRF2 756 aaPredicted RBP22.79■■□□□ 1.24
COL9A3-202ENST00000452372 ARVCFO00192 962 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 FIBPO43427 364 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 DTNBO60941 627 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 RAG1P15918 1043 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 SREBF1P36956 1147 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 SP2Q02086 613 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 LAMC2Q13753 1193 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 BRDTQ58F21 947 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-202ENST00000452372 GALNT17Q6IS24 598 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 EMID1Q96A84 441 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-202ENST00000452372 UBIAD1Q9Y5Z9 338 aa22.78■■□□□ 1.24
COL9A3-202ENST00000452372 CUL9Q8IWT3 2517 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 CABYRO75952 493 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 TIMP1P01033 207 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 XBP1P17861 261 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 SEMA3FQ13275 785 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 MYSM1Q5VVJ2 828 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 CXCL17Q6UXB2 119 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 DHX37Q8IY37 1157 aaKnown RBP22.77■■□□□ 1.24
COL9A3-202ENST00000452372 SLC43A3Q8NBI5 491 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 GPRASP2Q96D09 838 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 LLPHQ9BRT6 129 aaKnown RBP22.77■■□□□ 1.24
COL9A3-202ENST00000452372 POLR3EQ9NVU0 708 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 PCDHA4Q9UN74 947 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 GRIN2DO15399 1336 aa22.77■■□□□ 1.24
COL9A3-202ENST00000452372 MAFGO15525 162 aa22.76■■□□□ 1.23
COL9A3-202ENST00000452372 JAK2O60674 1132 aa22.76■■□□□ 1.23
COL9A3-202ENST00000452372 ITGB5P18084 799 aa22.76■■□□□ 1.23
COL9A3-202ENST00000452372 UBA1P22314 1058 aaKnown RBP22.76■■□□□ 1.23
COL9A3-202ENST00000452372 CELF3Q5SZQ8 465 aaKnown RBP22.76■■□□□ 1.23
COL9A3-202ENST00000452372 C16orf59Q7L2K0 433 aa22.76■■□□□ 1.23
COL9A3-202ENST00000452372 CCDC83Q8IWF9 413 aa22.76■■□□□ 1.23
COL9A3-202ENST00000452372 FAM126BQ8IXS8 530 aa22.76■■□□□ 1.23
COL9A3-202ENST00000452372 DAGLBQ8NCG7 672 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms