RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 CYP2C19P33261 490 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 USP11P51784 963 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 CACNB3P54284 484 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 PODNQ7Z5L7 613 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 C2CD5Q86YS7 1000 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 SIAH1Q8IUQ4 282 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 TSG101Q99816 390 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 MRIQ9BWK5 157 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 MMRN2Q9H8L6 949 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 SUGCTQ9HAC7 445 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 PANK4Q9NVE7 773 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 PCDHA2Q9Y5H9 948 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 PCDHA1Q9Y5I3 950 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 CYP3A7-CYP3A51PA0A087WV96 503 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 MARCH6O60337 910 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 CYP3A7P24462 503 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 KIF5AQ12840 1032 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 FAM26FQ5R3K3 315 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 HDXQ7Z353 690 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 DCAF4Q8WV16 495 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 FGFBP2Q9BYJ0 223 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 DHX36Q9H2U1 1008 aaKnown RBP17.76■□□□□ 0.43
SHQ1-202ENST00000444040 QTRT2Q9H974 415 aaKnown RBP17.76■□□□□ 0.43
SHQ1-202ENST00000444040 DBNDD1Q9H9R9 158 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 G3V3G9 751 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 H3BQF6 201 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 SLC1A4P43007 532 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 FKBP3Q00688 224 aaKnown RBP17.76■□□□□ 0.43
SHQ1-202ENST00000444040 KCNMA1Q12791 1236 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 DCAF8Q5TAQ9 597 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 SH3BP5LQ7L8J4 393 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 KRT27Q7Z3Y8 459 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 COL23A1Q86Y22 540 aaPredicted RBP17.76■□□□□ 0.43
SHQ1-202ENST00000444040 CRYGNQ8WXF5 182 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 ANO3Q9BYT9 981 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 TSGA10Q9BZW7 698 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.76■□□□□ 0.43
SHQ1-202ENST00000444040 FAM198AQ9UFP1 575 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 KIAA1024Q9UPX6 916 aa17.76■□□□□ 0.43
SHQ1-202ENST00000444040 LRRC53A6NM62 1247 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 MEIS2O14770 477 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 TCP10Q12799 353 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 SPA17Q15506 151 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 SLFN13Q68D06 897 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 IDI2Q9BXS1 227 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 KANSL2Q9H9L4 492 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 ARFGEF1Q9Y6D6 1849 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 MACROD2A1Z1Q3 448 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 ERCC3P19447 782 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 PDE6BP35913 854 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 KIF11P52732 1056 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 USP14P54578 494 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 CDC37Q16543 378 aaPredicted RBP17.75■□□□□ 0.43
SHQ1-202ENST00000444040 CERKLQ49MI3 558 aaPredicted RBP17.75■□□□□ 0.43
SHQ1-202ENST00000444040 CCDC155Q8N6L0 562 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 SECISBP2LQ93073 1101 aaKnown RBP17.75■□□□□ 0.43
SHQ1-202ENST00000444040 MASTLQ96GX5 879 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 P2RX7Q99572 595 aaKnown RBP17.75■□□□□ 0.43
SHQ1-202ENST00000444040 PCDHA13Q9Y5I0 950 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 COL4A3BPQ9Y5P4 624 aa17.75■□□□□ 0.43
SHQ1-202ENST00000444040 POTEB3A0JP26 581 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 POTECB2RU33 542 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 PLA2G4BP0C869 781 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 EIF4A3P38919 411 aaKnown RBP17.74■□□□□ 0.43
SHQ1-202ENST00000444040 TATDN1Q6P1N9 297 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 POTEBQ6S5H4 581 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 KIAA0825Q8IV33 1275 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 UIMC1Q96RL1 719 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 EDEM3Q9BZQ6 932 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 GBP3Q9H0R5 595 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 BMP2KQ9NSY1 1161 aaPredicted RBP17.74■□□□□ 0.43
SHQ1-202ENST00000444040 PI4KBQ9UBF8 816 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 SLC26A4O43511 780 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 ASTE1Q2TB18 679 aaPredicted RBP17.74■□□□□ 0.43
SHQ1-202ENST00000444040 MOXD1Q6UVY6 613 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 RRAGAQ7L523 313 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 RPGRIP1Q96KN7 1286 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 IFIH1Q9BYX4 1025 aaKnown RBP17.74■□□□□ 0.43
SHQ1-202ENST00000444040 SH2D4AQ9H788 454 aa17.74■□□□□ 0.43
SHQ1-202ENST00000444040 COL11A2P13942 1736 aaPredicted RBP17.74■□□□□ 0.43
SHQ1-202ENST00000444040 SSBP05455 408 aaKnown RBP eCLIP17.73■□□□□ 0.43
SHQ1-202ENST00000444040 CYP11B2P19099 503 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 TRAF5O00463 557 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 RAD21O60216 631 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 MED24O75448 989 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 SPIRE1Q08AE8 756 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 PDXDC1Q6P996 788 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 SMCR8Q8TEV9 937 aaPredicted RBP17.73■□□□□ 0.43
SHQ1-202ENST00000444040 CAPZA3Q96KX2 299 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 CAPN6Q9Y6Q1 641 aa17.73■□□□□ 0.43
SHQ1-202ENST00000444040 NPHP3-ACAD11A0A0J9YXS1 232 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 FRMD3A2A2Y4 597 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 PDE2AO00408 941 aaPredicted RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 ZNF185O15231 689 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 USO1O60763 962 aaKnown RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 FKBP1AP62942 108 aaKnown RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 CKAP4Q07065 602 aaKnown RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 AP3B2Q13367 1082 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 DACT2Q5SW24 774 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 STRIP1Q5VSL9 837 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms