RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 KSR1Q8IVT5 923 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 TOP6BLQ8N6T0 577 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 FRS2Q8WU20 508 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 SCARF2Q96GP6 870 aaPredicted RBP5.34□□□□□ -1.55
HMGB3-203ENST00000430118 Q96M66 194 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 ALG1Q9BT22 464 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 MYH16Q9H6N6 1097 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 CABP5Q9NP86 173 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 C1GALT1Q9NS00 363 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 SAMD15Q9P1V8 674 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 USP21Q9UK80 565 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 RIPOR2Q9Y4F9 1068 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 DIP2AQ14689 1571 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 MAST1Q9Y2H9 1570 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 SETBP1Q9Y6X0 1596 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 BLACEA4D250 179 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 C2orf71A6NGG8 1288 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 NEMP1O14524 444 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 TPD52L2O43399 206 aaKnown RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 AKAP10O43572 662 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 GAS7O60861 476 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 VAMP4O75379 141 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 RFPL1O75677 317 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 EIF3JO75822 258 aaKnown RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 FBXO21O94952 628 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 MAP4K4O95819 1239 aaPredicted RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 THBDP07204 575 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 PYGMP11217 842 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 SRFP11831 508 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 MAP4P27816 1152 aaKnown RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 SNRPNP63162 240 aaKnown RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 DSG1Q02413 1049 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 ITKQ08881 620 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 PAK1Q13153 545 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 ARHGAP44Q17R89 818 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 PRSS53Q2L4Q9 553 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 KIZQ2M2Z5 673 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 SGO2Q562F6 1265 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 DENND5AQ6IQ26 1287 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 FAM214BQ7L5A3 538 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 ZBTB46Q86UZ6 589 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 FAM20CQ8IXL6 584 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 SMC1BQ8NDV3 1235 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 UTP4Q969X6 686 aaKnown RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 MTMR8Q96EF0 704 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 MMP19Q99542 508 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 PHF20Q9BVI0 1012 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 TRIT1Q9H3H1 467 aaKnown RBP5.33□□□□□ -1.56
HMGB3-203ENST00000430118 TRAF6Q9Y4K3 522 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 DUOX2Q9NRD8 1548 aa5.33□□□□□ -1.56
HMGB3-203ENST00000430118 ERBINQ96RT1 1412 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 SETD5Q9C0A6 1442 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 TET3O43151 1660 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 SHTN1A0MZ66 631 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GOLGA6CA6NDK9 693 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GOLGA6BA6NDN3 693 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 FAM229AH3BQW9 127 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 DYNC1LI2O43237 492 aaPredicted RBP5.32□□□□□ -1.56
HMGB3-203ENST00000430118 PLIN1O60240 522 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 SCGB1D2O95969 90 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 CD3EP07766 207 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GOLGA6DP0CG33 693 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 BMP3P12645 472 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 NOS3P29474 1203 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GNALP38405 381 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 CTSKP43235 329 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 SEPHS1P49903 392 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 RAB27AP51159 221 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 TMPRSS15P98073 1019 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 CYP27A1Q02318 531 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 ADGRE1Q14246 886 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 CLEC16AQ2KHT3 1053 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 FAM47CQ5HY64 1035 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GORABQ5T7V8 394 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 SHISA2Q6UWI4 295 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 LBX2Q6XYB7 198 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 C11orf74Q86VG3 221 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 RAVER1Q8IY67 606 aaKnown RBP5.32□□□□□ -1.56
HMGB3-203ENST00000430118 TCEAL8Q8IYN2 117 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 CHPFQ8IZ52 775 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 MYO1HQ8N1T3 1032 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 MFSD4AQ8N468 514 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 CNTD1Q8N815 330 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 MORC4Q8TE76 937 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 WFDC12Q8WWY7 111 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 LRRC59Q96AG4 307 aaKnown RBP5.32□□□□□ -1.56
HMGB3-203ENST00000430118 UBL7Q96S82 380 aaPredicted RBP5.32□□□□□ -1.56
HMGB3-203ENST00000430118 SLC13A1Q9BZW2 595 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 MKNK2Q9HBH9 465 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 TCF7L1Q9HCS4 588 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GOLGA6AQ9NYA3 693 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 GABBR1Q9UBS5 961 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 B4GALT6Q9UBX8 382 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 TRHDEQ9UKU6 1024 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 TRPC5Q9UL62 973 aaPredicted RBP5.32□□□□□ -1.56
HMGB3-203ENST00000430118 ZKSCAN5Q9Y2L8 839 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 PCDHA9Q9Y5H5 950 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 NHSL1Q5SYE7 1610 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 ASXL1Q8IXJ9 1541 aa5.32□□□□□ -1.56
HMGB3-203ENST00000430118 RPRD2Q5VT52 1461 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 311.5 ms