RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 POU3F3P20264 500 aaPredicted RBP6.41□□□□□ -1.38
VPS54-204ENST00000416400 POU3F2P20265 443 aaPredicted RBP6.41□□□□□ -1.38
VPS54-204ENST00000416400 SDHBP21912 280 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 CDKN1CP49918 316 aaPredicted RBP6.41□□□□□ -1.38
VPS54-204ENST00000416400 GUCY1A3Q02108 690 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 PLEKHG6Q3KR16 790 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 MROH9Q5TGP6 573 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 PRR23BQ6ZRT6 265 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 DDX42Q86XP3 938 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS54-204ENST00000416400 AFAP1L2Q8N4X5 818 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 NETO2Q8NC67 525 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 LEO1Q8WVC0 666 aaPredicted RBP6.41□□□□□ -1.38
VPS54-204ENST00000416400 DPF3Q92784 378 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 PEX11GQ96HA9 241 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 MTA3Q9BTC8 594 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 AP5M1Q9H0R1 490 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 SIRT5Q9NXA8 310 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 KLHL42Q9P2K6 505 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 FAM83GA6ND36 823 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 SRGAP3O43295 1099 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 DGKIO75912 1065 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 NPTXRO95502 500 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 EFEMP2O95967 443 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 NTRK1P04629 796 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 DBHP09172 617 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 PDGFRBP09619 1106 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 CHRNA2Q15822 529 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 PKN3Q6P5Z2 889 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 LBX2Q6XYB7 198 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 UBE2R2Q712K3 238 aaPredicted RBP6.4□□□□□ -1.38
VPS54-204ENST00000416400 DDX46Q7L014 1031 aaKnown RBP6.4□□□□□ -1.38
VPS54-204ENST00000416400 DCP2Q8IU60 420 aaKnown RBP6.4□□□□□ -1.38
VPS54-204ENST00000416400 FBXO15Q8NCQ5 510 aaPredicted RBP6.4□□□□□ -1.38
VPS54-204ENST00000416400 ATL2Q8NHH9 583 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 STAG1Q8WVM7 1258 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 SLC38A3Q99624 504 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 ZNF552Q9H707 407 aaPredicted RBP6.4□□□□□ -1.38
VPS54-204ENST00000416400 PCDHA9Q9Y5H5 950 aa6.4□□□□□ -1.38
VPS54-204ENST00000416400 ZC3H12DA2A288 527 aaKnown RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 BTBD11A6QL63 1104 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 FAM47E-STBD1D6RA91 191 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 ARNTLO00327 626 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 MAFKO60675 156 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 PPP1R11O60927 126 aaPredicted RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 FARP2O94887 1054 aaPredicted RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 S100BP04271 92 aaPredicted RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 FPR2P25090 351 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 EVA1CP58658 441 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 SRSF3P84103 164 aaKnown RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 PCBP1Q15365 356 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS54-204ENST00000416400 CFAP100Q494V2 611 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 ZCCHC8Q6NZY4 707 aaKnown RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 ZC3H14Q6PJT7 736 aaKnown RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 FERMT3Q86UX7 667 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 PLEKHO2Q8TD55 490 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 IRF2BPLQ9H1B7 796 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 EPB41L1Q9H4G0 881 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 NUB1Q9Y5A7 615 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 PCDHA8Q9Y5H6 950 aa6.39□□□□□ -1.39
VPS54-204ENST00000416400 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.39□□□□□ -1.39
VPS54-204ENST00000416400 ALG1L2C9J202 215 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 HRKO00198 91 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 KRIT1O00522 736 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 GSTA4O15217 222 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 ZBTB7AO95365 584 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 GLI4P10075 376 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 GRK2P25098 689 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 PMLP29590 882 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 GRK3P35626 688 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 MAPKAPK2P49137 400 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 SPIRE1Q08AE8 756 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 STRN3Q13033 797 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 PAK1Q13153 545 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 SLC9A5Q14940 896 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 PIK3R6Q5UE93 754 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 CDCA2Q69YH5 1023 aaPredicted RBP6.38□□□□□ -1.39
VPS54-204ENST00000416400 RPTNQ6XPR3 784 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 TMC6Q7Z403 805 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 DDX53Q86TM3 631 aaKnown RBP6.38□□□□□ -1.39
VPS54-204ENST00000416400 RIOX2Q8IUF8 465 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 CEP89Q96ST8 783 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS54-204ENST00000416400 X6R8D5 127 aa6.38□□□□□ -1.39
VPS54-204ENST00000416400 ARVCFO00192 962 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 MARCH6O60337 910 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 MSCO60682 206 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 PEX10O60683 326 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 SOD2P04179 222 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 TMEM253P0C7T8 217 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 GNAT1P11488 350 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 YBX1P67809 324 aaKnown RBP6.37□□□□□ -1.39
VPS54-204ENST00000416400 ST5P78524 1137 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 FAM50AQ14320 339 aaKnown RBP6.37□□□□□ -1.39
VPS54-204ENST00000416400 DHCR24Q15392 516 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 SEPT7Q16181 437 aaKnown RBP6.37□□□□□ -1.39
VPS54-204ENST00000416400 EP400NLQ6ZTU2 488 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 STRA8Q7Z7C7 330 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 ANKLE2Q86XL3 938 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 ZC3H7AQ8IWR0 971 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms