RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 CEP55Q53EZ4 464 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 C1orf53Q5VUE5 145 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 JAKMIP3Q5VZ66 844 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 CCSAPQ6IQ19 270 aaPredicted RBP16.69■□□□□ 0.26
LIMS1-206ENST00000414829 METTL7BQ6UX53 244 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 NAP1L4Q99733 375 aaKnown RBP16.69■□□□□ 0.26
LIMS1-206ENST00000414829 JADE2Q9NQC1 790 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 TCEAL9Q9UHQ7 104 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.69■□□□□ 0.26
LIMS1-206ENST00000414829 UBIAD1Q9Y5Z9 338 aa16.69■□□□□ 0.26
LIMS1-206ENST00000414829 A0A1W2PQ45 241 aaPredicted RBP16.68■□□□□ 0.26
LIMS1-206ENST00000414829 A0A1W2PQY0 241 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 A6NJR5 290 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 NOP56O00567 594 aaKnown RBP16.68■□□□□ 0.26
LIMS1-206ENST00000414829 EVI5O60447 810 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 RGS20O76081 388 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 ARIH2O95376 493 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 ASGR1P07306 291 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 CYP3A4P08684 503 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 DGKDQ16760 1214 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 LY6KQ17RY6 165 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 CELF3Q5SZQ8 465 aaKnown RBP16.68■□□□□ 0.26
LIMS1-206ENST00000414829 TMX3Q96JJ7 454 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 MXRA8Q9BRK3 442 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 KATNAL1Q9BW62 490 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 MLXIPQ9HAP2 919 aa16.68■□□□□ 0.26
LIMS1-206ENST00000414829 A0A0U1RQG5 324 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-206ENST00000414829 CCDC194A0A1B0GVG4 234 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 JAK2O60674 1132 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 GGPS1O95749 300 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 KRT2P35908 639 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 USP11P51784 963 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 ARHGAP1Q07960 439 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 NONOQ15233 471 aaKnown RBP eCLIP16.67■□□□□ 0.26
LIMS1-206ENST00000414829 DPF3Q92784 378 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 SPATA33Q96N06 139 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 SDF4Q9BRK5 362 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 MTG1Q9BT17 334 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-206ENST00000414829 TMEM260Q9NX78 707 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 RTEL1Q9NZ71 1219 aa16.67■□□□□ 0.26
LIMS1-206ENST00000414829 MYADML2A6NDP7 307 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 CTAGE5O15320 804 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 FDPSP14324 419 aaKnown RBP16.66■□□□□ 0.26
LIMS1-206ENST00000414829 GCFC2P16383 781 aaKnown RBP16.66■□□□□ 0.26
LIMS1-206ENST00000414829 ITGB5P18084 799 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 ST3GAL1Q11201 340 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 SNX17Q15036 470 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 MOXD1Q6UVY6 613 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 AFG1LQ8WV93 481 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 VTI1AQ96AJ9 217 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 PGBD1Q96JS3 809 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 C8orf76Q96K31 380 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 AIFM3Q96NN9 605 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 FRMPD3Q5JV73 1810 aa16.66■□□□□ 0.26
LIMS1-206ENST00000414829 MKI67P46013 3256 aaKnown RBP16.65■□□□□ 0.26
LIMS1-206ENST00000414829 MEIS1O00470 390 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 PPFIA4O75335 1185 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 MMP1P03956 469 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 MMP3P08254 477 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 CIITAP33076 1130 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 BEX3Q00994 111 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 MYSM1Q5VVJ2 828 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 CXCL17Q6UXB2 119 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 SLC39A5Q6ZMH5 540 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 RASGRP4Q8TDF6 673 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 CRYGNQ8WXF5 182 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 KCNH7Q9NS40 1196 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 PRKAG2Q9UGJ0 569 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 KCNJ14Q9UNX9 436 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 MCM3APO60318 1980 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 NFASCO94856 1347 aa16.65■□□□□ 0.26
LIMS1-206ENST00000414829 M0R2N6 131 aa16.64■□□□□ 0.25
LIMS1-206ENST00000414829 MYL3P08590 195 aa16.64■□□□□ 0.25
LIMS1-206ENST00000414829 HOXD8P13378 290 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-206ENST00000414829 ATN1P54259 1190 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-206ENST00000414829 PURAQ00577 322 aaKnown RBP16.64■□□□□ 0.25
LIMS1-206ENST00000414829 PLA2G4DQ86XP0 818 aa16.64■□□□□ 0.25
LIMS1-206ENST00000414829 TBCKQ8TEA7 893 aa16.64■□□□□ 0.25
LIMS1-206ENST00000414829 COPS5Q92905 334 aa16.64■□□□□ 0.25
LIMS1-206ENST00000414829 FERMT2Q96AC1 680 aa16.64■□□□□ 0.25
LIMS1-206ENST00000414829 JPH1Q9HDC5 661 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-206ENST00000414829 ZNF215Q9UL58 517 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-206ENST00000414829 DCDC2CA8MYV0 355 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 ARVCFO00192 962 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 TLR3O15455 904 aaKnown RBP16.63■□□□□ 0.25
LIMS1-206ENST00000414829 KCNA2P16389 499 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 RTP1P59025 263 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 SEMA3FQ13275 785 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 GNL2Q13823 731 aaKnown RBP16.63■□□□□ 0.25
LIMS1-206ENST00000414829 NPY5RQ15761 445 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 LRRC26Q2I0M4 334 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 KRT40Q6A162 431 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 ANKRD33Q7Z3H0 272 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 NEK8Q86SG6 692 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 DIS3L2Q8IYB7 885 aaKnown RBP16.63■□□□□ 0.25
LIMS1-206ENST00000414829 TOX2Q96NM4 488 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 TBC1D22BQ9NU19 505 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 SMC3Q9UQE7 1217 aa16.63■□□□□ 0.25
LIMS1-206ENST00000414829 CD2BP2O95400 341 aaKnown RBP16.62■□□□□ 0.25
LIMS1-206ENST00000414829 F2P00734 622 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms