RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 CAGE1Q8TC20 777 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 CPLX3Q8WVH0 158 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 DRC1Q96MC2 740 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 PPP1R9BQ96SB3 815 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 PANK4Q9NVE7 773 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 TBX3O15119 743 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 MAFGO15525 162 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 USO1O60763 962 aaKnown RBP9.43□□□□□ -0.9
SYNE1-211ENST00000413186 PRELPP51888 382 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 RAD51AP2Q09MP3 1159 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 DAGLBQ8NCG7 672 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 TRIM6Q9C030 488 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-211ENST00000413186 GBP3Q9H0R5 595 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 BLZF1Q9H2G9 400 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 TMEM260Q9NX78 707 aa9.43□□□□□ -0.9
SYNE1-211ENST00000413186 SEPT9Q9UHD8 586 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-211ENST00000413186 KIF5CO60282 957 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 VCAM1P19320 739 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 NOLC1Q14978 699 aaKnown RBP eCLIP9.42□□□□□ -0.9
SYNE1-211ENST00000413186 SMC1BQ8NDV3 1235 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 TRPM4Q8TD43 1214 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 OPTNQ96CV9 577 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 CENPHQ9H3R5 247 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 MROH8Q9H579 483 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 RIOX1Q9H6W3 641 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 ZNF541Q9H0D2 1346 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 NUP98P52948 1817 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 STX10O60499 249 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 RPN1P04843 607 aaKnown RBP9.42□□□□□ -0.9
SYNE1-211ENST00000413186 TERF1P54274 439 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 TUBB4BP68371 445 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 PNOCQ13519 176 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 SEPT6Q14141 434 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 NEK11Q8NG66 645 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 CEP170P1Q96L14 293 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 MMRN2Q9H8L6 949 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 IL17RBQ9NRM6 502 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 EXOC3O60645 756 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 WDR18Q9BV38 432 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 SUGCTQ9HAC7 445 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 IPO5O00410 1097 aaKnown RBP9.42□□□□□ -0.9
SYNE1-211ENST00000413186 SLC26A4O43511 780 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 MCM3P25205 808 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 CETN2P41208 172 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 C7orf43Q8WVR3 580 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 UBXN4Q92575 508 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 FAM212AQ96EL1 285 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 TMEM63CQ9P1W3 806 aa9.42□□□□□ -0.9
SYNE1-211ENST00000413186 STAM2O75886 525 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 OAZ1P54368 228 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 INHBEP58166 350 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 ATP2C1P98194 919 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-211ENST00000413186 TBC1D8BQ0IIM8 1120 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 PPIL2Q13356 520 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 PROCA1Q8NCQ7 364 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-211ENST00000413186 ADPGKQ9BRR6 497 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 FTOQ9C0B1 505 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE1-211ENST00000413186 TAF1DQ9H5J8 278 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-211ENST00000413186 FGRP09769 529 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 PTPRAP18433 802 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 UBXN1Q04323 297 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 PDIA5Q14554 519 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 TATDN1Q6P1N9 297 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 NELFBQ8WX92 580 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 CFAP57Q96MR6 1250 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 NOC4LQ9BVI4 516 aaKnown RBP9.41□□□□□ -0.9
SYNE1-211ENST00000413186 NBPF3Q9H094 633 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 DISC1Q9NRI5 854 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 FBXO28Q9NVF7 368 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 IMPACTQ9P2X3 320 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 MAPK8IP1Q9UQF2 711 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 NFE2L3Q9Y4A8 694 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 THSD7AQ9UPZ6 1657 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 FDPSP14324 419 aaKnown RBP9.41□□□□□ -0.9
SYNE1-211ENST00000413186 PSMD2Q13200 908 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 HSP90AA4PQ58FG1 418 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 ODR4Q5SWX8 454 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 DUOX1Q9NRD9 1551 aa9.41□□□□□ -0.9
SYNE1-211ENST00000413186 K7ENM7 598 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 CTDNEP1O95476 244 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 NR3C2P08235 984 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 HARSP12081 509 aaKnown RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 ALCAMQ13740 583 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 DCAF17Q5H9S7 520 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 WDR44Q5JSH3 913 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 RESP18Q5W5W9 173 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 CCDC186Q7Z3E2 898 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 EHBP1Q8NDI1 1231 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 TBC1D7Q9P0N9 293 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 PCDHA5Q9Y5H7 936 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 PHLPP2Q6ZVD8 1323 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 ANKRD62A6NC57 917 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 ZBTB22O15209 634 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 AKR1B10O60218 316 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 SORBS3O60504 671 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 P4HBP07237 508 aaKnown RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 PLA2G4BP0C869 781 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 PLCG1P19174 1290 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 CYLC1P35663 651 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 BIRC3Q13489 604 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms