RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SPDYE3A6NKU9 549 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 ZBTB5O15062 677 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 FTCDO95954 541 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 COASYQ13057 564 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 CTTNQ14247 550 aaKnown RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 TPH2Q8IWU9 490 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 MYOCDQ8IZQ8 938 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 RAD54LQ92698 747 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 HAS1Q92839 578 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 CSRNP1Q96S65 589 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 COA1Q9GZY4 146 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 DNAJC18Q9H819 358 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 ATP6V0A2Q9Y487 856 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 RASSF10A6NK89 507 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 F5H6K3 240 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 KLRC3Q07444 240 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 ASPRV1Q53RT3 343 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 MS4A14Q96JA4 679 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 PLA2G4BP0C869 781 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 SRGNP10124 158 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 MAGEA1P43355 309 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 GALNT17Q6IS24 598 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 CPXCR1Q8N123 301 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 KCNA1Q09470 495 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 CRY2Q49AN0 593 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 VWA3BQ502W6 1294 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 TTC19Q6DKK2 380 aaPredicted RBP14.84□□□□□ -0.03
VPS54-203ENST00000409558 FAM133AQ8N9E0 248 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 ANO3Q9BYT9 981 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 PDGFDQ9GZP0 370 aaPredicted RBP14.84□□□□□ -0.03
VPS54-203ENST00000409558 RIOX1Q9H6W3 641 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 CAPN11Q9UMQ6 739 aa14.84□□□□□ -0.03
VPS54-203ENST00000409558 LRRC10BA6NIK2 292 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 EDIL3O43854 480 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 JAG1P78504 1218 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 MIIPQ5JXC2 388 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 FAM114A1Q8IWE2 563 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 COG1Q8WTW3 980 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 SECISBP2LQ93073 1101 aaKnown RBP14.83□□□□□ -0.03
VPS54-203ENST00000409558 ADAMTS1Q9UHI8 967 aa14.83□□□□□ -0.03
VPS54-203ENST00000409558 ZNF263O14978 683 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 MED24O75448 989 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 CASP5P51878 434 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 LLGL1Q15334 1064 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 RSRC2Q7L4I2 434 aaKnown RBP14.83□□□□□ -0.04
VPS54-203ENST00000409558 ZNF507Q8TCN5 953 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 CCDC51Q96ER9 411 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 AK8Q96MA6 479 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 BHMT2Q9H2M3 363 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 PDS5AQ29RF7 1337 aaKnown RBP14.83□□□□□ -0.04
VPS54-203ENST00000409558 ECE2O60344 883 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 NOP2P46087 812 aaKnown RBP14.83□□□□□ -0.04
VPS54-203ENST00000409558 KIF11P52732 1056 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 KRT83P78385 493 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 KCNB1Q14721 858 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 HSP90B2PQ58FF3 399 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 ANKS1AQ92625 1134 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 ARHGAP20Q9P2F6 1191 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 FAN1Q9Y2M0 1017 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 ESYT3A0FGR9 886 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 TUBB4AP04350 444 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 SP4Q02446 784 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 ADAM9Q13443 819 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 SP8Q8IXZ3 490 aa14.83□□□□□ -0.04
VPS54-203ENST00000409558 PDE2AO00408 941 aaPredicted RBP14.82□□□□□ -0.04
VPS54-203ENST00000409558 DGKZQ13574 1117 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 ABCB5Q2M3G0 1257 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 HDAC7Q8WUI4 952 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 PRMT6Q96LA8 375 aaPredicted RBP14.82□□□□□ -0.04
VPS54-203ENST00000409558 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS54-203ENST00000409558 PPIP5K2O43314 1243 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 ZBED6P86452 979 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 UNC13DQ70J99 1090 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 DAGLBQ8NCG7 672 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 ACER1Q8TDN7 264 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 ELMO3Q96BJ8 720 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 P2RX7Q99572 595 aaKnown RBP14.82□□□□□ -0.04
VPS54-203ENST00000409558 C7orf25Q9BPX7 421 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 FUT8Q9BYC5 575 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 DOCK2Q92608 1830 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 TIAM2Q8IVF5 1701 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 ZRANB2O95218 330 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS54-203ENST00000409558 GCNT3O95395 438 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 TRIM14Q14142 442 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 GJB7Q6PEY0 223 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 MTMR9Q96QG7 549 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 FBXO28Q9NVF7 368 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 HYOU1Q9Y4L1 999 aa14.82□□□□□ -0.04
VPS54-203ENST00000409558 BCORQ6W2J9 1755 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 LAD1O00515 517 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 ERLIN1O75477 346 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 HAUS4Q9H6D7 363 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 NR2F2P24468 414 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 PRPHP41219 470 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 IFT81Q8WYA0 676 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 SPAG5Q96R06 1193 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 CENPHQ9H3R5 247 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 NDUFB10O96000 172 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 ARHGAP4P98171 946 aa14.81□□□□□ -0.04
VPS54-203ENST00000409558 PCDHA13Q9Y5I0 950 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms