RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 FBXL18Q96ME1 805 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 KLHL25Q9H0H3 589 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 RWDD1Q9H446 243 aaPredicted RBP6.5□□□□□ -1.37
CLK1-202ENST00000409403 CALCOCO1Q9P1Z2 691 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 SUSD2Q9UGT4 822 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 TPX2Q9ULW0 747 aaKnown RBP6.5□□□□□ -1.37
CLK1-202ENST00000409403 DDX49Q9Y6V7 483 aaKnown RBP6.5□□□□□ -1.37
CLK1-202ENST00000409403 LAMB4A4D0S4 1761 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 AGRPO00253 132 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 CBFA2T2O43439 604 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 EOMESO95936 686 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 IGHA1P01876 353 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 AUHQ13825 339 aaKnown RBP6.49□□□□□ -1.37
CLK1-202ENST00000409403 LRRC47Q8N1G4 583 aaKnown RBP6.49□□□□□ -1.37
CLK1-202ENST00000409403 COX4I2Q96KJ9 171 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 TIGD1Q96MW7 591 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 APBA2Q99767 749 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 KANSL2Q9H9L4 492 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 LY75O60449 1722 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 ZNF521Q96K83 1311 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 CCDC88AQ3V6T2 1871 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 CLSTN1O94985 981 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 PTMAP06454 111 aaKnown RBP6.49□□□□□ -1.37
CLK1-202ENST00000409403 FAM87AP0C7U9 286 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 GATA4P43694 442 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 EVA1CP58658 441 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 CBX1P83916 185 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 SYCP1Q15431 976 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 DDB1Q16531 1140 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 SV2CQ496J9 727 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 C7orf61Q8IZ16 206 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 SGSM3Q96HU1 749 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 SPATA9Q9BWV2 254 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 CARD11Q9BXL7 1154 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 GBP3Q9H0R5 595 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 YY1AP1Q9H869 796 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 TFCP2L1Q9NZI6 479 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 OGFRQ9NZT2 677 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 CGNQ9P2M7 1197 aaKnown RBP6.49□□□□□ -1.37
CLK1-202ENST00000409403 RAXQ9Y2V3 346 aa6.49□□□□□ -1.37
CLK1-202ENST00000409403 COL5A2P05997 1499 aaPredicted RBP6.48□□□□□ -1.37
CLK1-202ENST00000409403 PLEKHH1Q9ULM0 1364 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 HMX2A2RU54 273 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 CDC45O75419 566 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 LEFTY1O75610 366 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 NUCB2P80303 420 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 SLFN5Q08AF3 891 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 ARHGAP27Q6ZUM4 889 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 ADAT2Q7Z6V5 191 aaKnown RBP6.48□□□□□ -1.37
CLK1-202ENST00000409403 HOMER1Q86YM7 354 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 APPBP2Q92624 585 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 TP53INP1Q96A56 240 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 ZNF830Q96NB3 372 aaPredicted RBP6.48□□□□□ -1.37
CLK1-202ENST00000409403 C7orf69Q9H7B7 122 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 PRDM5Q9NQX1 630 aaPredicted RBP6.48□□□□□ -1.37
CLK1-202ENST00000409403 FANCLQ9NW38 375 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 TMEM260Q9NX78 707 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 WHRNQ9P202 907 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 STOML1Q9UBI4 398 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 KIF16BQ96L93 1317 aa6.48□□□□□ -1.37
CLK1-202ENST00000409403 COL6A3P12111 3177 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 ESYT3A0FGR9 886 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 SHOXO15266 292 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 PPM1BO75688 479 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 TPM3P06753 285 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 CD247P20963 164 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 SQSTM1Q13501 440 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 NBPF9Q3BBW0 867 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 OGFOD3Q6PK18 319 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 ZAR1Q86SH2 424 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 TRMT2AQ8IZ69 625 aaKnown RBP6.47□□□□□ -1.37
CLK1-202ENST00000409403 GATA6Q92908 595 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 FGD4Q96M96 766 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 CWC22Q9HCG8 908 aaKnown RBP6.47□□□□□ -1.37
CLK1-202ENST00000409403 LRP2BPQ9P2M1 347 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 APEX2Q9UBZ4 518 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 LEMD3Q9Y2U8 911 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 THRAP3Q9Y2W1 955 aaKnown RBP6.47□□□□□ -1.37
CLK1-202ENST00000409403 ZNF451Q9Y4E5 1061 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 PCDHB12Q9Y5F1 795 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 PTCH2Q9Y6C5 1203 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 SZT2Q5T011 3432 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 PPLO60437 1756 aa6.47□□□□□ -1.37
CLK1-202ENST00000409403 TOGARAM1Q9Y4F4 1720 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 CLGNO14967 610 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 IGHDP01880 384 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 ITGA4P13612 1032 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 LONRF2Q1L5Z9 754 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 PLA2G4EQ3MJ16 856 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 PLEKHG4Q58EX7 1191 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 SFRP5Q5T4F7 317 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 CTR9Q6PD62 1173 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 ZNF662Q6ZS27 426 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 ZSWIM2Q8NEG5 633 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 PIBF1Q8WXW3 757 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 PPP1R14AQ96A00 147 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 SYAP1Q96A49 352 aaPredicted RBP6.46□□□□□ -1.37
CLK1-202ENST00000409403 GP6Q9HCN6 339 aa6.46□□□□□ -1.37
CLK1-202ENST00000409403 BCCIPQ9P287 314 aaKnown RBP eCLIP6.46□□□□□ -1.37
CLK1-202ENST00000409403 GTF2IRD1Q9UHL9 959 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms