RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ATP10DQ9P241 1426 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 MAP3K15Q6ZN16 1313 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 KIF21AQ7Z4S6 1674 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 M0QZ92 97 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 NR1D1P20393 614 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ADORA1P30542 326 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 BTDP43251 543 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CYP4A11Q02928 519 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SEPT2Q15019 361 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ARMC2Q8NEN0 867 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CCDC17Q96LX7 622 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 AMNQ9BXJ7 453 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 FTOQ9C0B1 505 aaKnown RBP eCLIP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 TXLNGQ9NUQ3 528 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 PTPN22Q9Y2R2 807 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CAPN9O14815 690 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 SGO2Q562F6 1265 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 SCYL3Q8IZE3 742 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 CCDC24Q8N4L8 307 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 NEK9Q8TD19 979 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 ADPGKQ9BRR6 497 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 SH2B2O14492 632 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 GPC4O75487 556 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 ALAS1P13196 640 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 EIF4A3P38919 411 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 POMGNT1Q8WZA1 660 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 NHEJ1Q9H9Q4 299 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 SUFUQ9UMX1 484 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 CLASP1Q7Z460 1538 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 SERPING1P05155 500 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 MAPK4P31152 587 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 ADD2P35612 726 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 NEK2P51955 445 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 PSMD2Q13200 908 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 MMS22LQ6ZRQ5 1243 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 CEP70Q8NHQ1 597 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 SDCCAG3Q96C92 435 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 COBLO75128 1261 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 MOCS3O95396 460 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 GSTA1P08263 222 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 GSTA2P09210 222 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 EEF1DP29692 281 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 PDE1BQ01064 536 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 PABPC4Q13310 644 aaKnown RBP eCLIP11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 TCP11X2Q5H9J9 407 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 TMTC3Q6ZXV5 915 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 CCHCR1Q8TD31 782 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 NCAPGQ9BPX3 1015 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 GREM2Q9H772 168 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 IFT122Q9HBG6 1241 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 ANLNQ9NQW6 1124 aa11.11□□□□□ -0.63
LIMCH1-203ENST00000396595 M0R2C6 588 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PFDN6O15212 129 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PIK3CAP42336 1068 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 NBPF10Q6P3W6 841 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 GRAMD1CQ8IYS0 662 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 MLXIPQ9HAP2 919 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 AS3MTQ9HBK9 375 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 ABCB6Q9NP58 842 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 SYNMO15061 1565 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 A0A087WWV3 80 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 WDR46O15213 610 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 TNFAIP1Q13829 316 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PUS3Q9BZE2 481 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 YIPF3Q9GZM5 350 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 ANAPC5Q9UJX4 755 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 SGK1O00141 431 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 FTCDO95954 541 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 CUL1Q13616 776 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 NECTIN1Q15223 517 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 MMEL1Q495T6 779 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PDZD8Q8NEN9 1154 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 DRC3Q9H069 523 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 CACYBPQ9HB71 228 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 BAG5Q9UL15 447 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 LARGE1O95461 756 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 TTC4O95801 387 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 LIFRP42702 1097 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 POLA2Q14181 598 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 SLFNL1Q499Z3 407 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 MUM1L1Q5H9M0 696 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 JADE1Q6IE81 842 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 THRAP3Q9Y2W1 955 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PCDHA13Q9Y5I0 950 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PRPF3O43395 683 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 MFAP3LO75121 409 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 LRGUKQ96M69 825 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 MMS19Q96T76 1030 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 GIMAP4Q9NUV9 329 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 CD2APQ9Y5K6 639 aa11.1□□□□□ -0.63
LIMCH1-203ENST00000396595 PALM3A6NDB9 673 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 RASGRF2O14827 1237 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 NR5A1Q13285 461 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 TERF2Q15554 542 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ANKRD20A4Q4UJ75 823 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ANKRD20A8PQ5CZ79 823 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ANKRD20A2Q5SQ80 823 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 ANKRD20A1Q5TYW2 823 aa11.09□□□□□ -0.63
LIMCH1-203ENST00000396595 C16orf87Q6PH81 154 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms