RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 RNF17Q9BXT8 1623 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 APOA4P06727 396 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 CIITAP33076 1130 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 TAF1BQ53T94 588 aaPredicted RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 TRIM69Q86WT6 500 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 ZFYVE19Q96K21 471 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 TOM1L1O75674 476 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 MYO1DO94832 1006 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 ANGPT1Q15389 498 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 PARP10Q53GL7 1025 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 CREB3L3Q68CJ9 461 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 BZW1Q7L1Q6 419 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 KRT26Q7Z3Y9 468 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 CEP70Q8NHQ1 597 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 INTS4Q96HW7 963 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 H0Y626 953 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 TRIM16O95361 564 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 NCF2P19878 526 aaPredicted RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 LBRQ14739 615 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 IMPG1Q17R60 797 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 LONRF3Q496Y0 759 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 ANKS3Q6ZW76 656 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 FRA10AC1Q70Z53 315 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 PPP1R14AQ96A00 147 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 LSM14BQ9BX40 385 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 RICTORQ6R327 1708 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 B4E1Z4 1266 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 SRGAP2CP0DJJ0 459 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 ESRRAP11474 423 aaPredicted RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 TRAPPC10P48553 1259 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 AARSP49588 968 aaKnown RBP eCLIP11.48□□□□□ -0.57
RTN3-206ENST00000377819 RAD51Q06609 339 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 DMP1Q13316 513 aaPredicted RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 MORF4L2Q15014 288 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 KIF19Q2TAC6 998 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 CACTINQ8WUQ7 758 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 NT5C1BQ96P26 610 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 MRPL40Q9NQ50 206 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 DDX25Q9UHL0 483 aaKnown RBP11.48□□□□□ -0.57
RTN3-206ENST00000377819 POLIQ9UNA4 740 aa11.48□□□□□ -0.57
RTN3-206ENST00000377819 GOLGA8RI6L899 631 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 LIG3P49916 1009 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 ARL13BQ3SXY8 428 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 KIAA2013Q8IYS2 634 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 TCP11Q8WWU5 503 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 NELFBQ8WX92 580 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 TRIM54Q9BYV2 358 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 PARVBQ9HBI1 364 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 CACNA2D2Q9NY47 1150 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 GUCA1CO95843 209 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 IMPDH2P12268 514 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 ATP8B2P98198 1209 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 KCNA1Q09470 495 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 ADALQ6DHV7 355 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 C7orf31Q8N865 590 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 RETREG2Q8NC44 543 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 FAM81BQ96LP2 452 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 C6orf203Q9P0P8 240 aaPredicted RBP11.47□□□□□ -0.57
RTN3-206ENST00000377819 GNPATO15228 680 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 SNX2O60749 519 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 TOMM70O94826 608 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 ZNF75DP51815 510 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 GPIHBP1Q8IV16 184 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 SIX6OS1Q8N1H7 587 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 SLC7A3Q8WY07 619 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 GFM2Q969S9 779 aaKnown RBP11.47□□□□□ -0.57
RTN3-206ENST00000377819 DNAJC7Q99615 494 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 ZNF644Q9H582 1327 aaPredicted RBP11.47□□□□□ -0.57
RTN3-206ENST00000377819 RASSF10A6NK89 507 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 K7ENM7 598 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 CSPG5O95196 566 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 PSMC1P62191 440 aaKnown RBP11.47□□□□□ -0.57
RTN3-206ENST00000377819 ELF2Q15723 593 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 TRIM71Q2Q1W2 868 aaKnown RBP11.47□□□□□ -0.57
RTN3-206ENST00000377819 GPBP1Q86WP2 473 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 WDR75Q8IWA0 830 aaKnown RBP11.47□□□□□ -0.57
RTN3-206ENST00000377819 RAB42Q8N4Z0 105 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 ARHGAP45Q92619 1136 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 TBC1D32Q96NH3 1257 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 CUEDC2Q9H467 287 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 PLEKHA4Q9H4M7 779 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 HAUS4Q9H6D7 363 aa11.47□□□□□ -0.57
RTN3-206ENST00000377819 SH3TC1Q8TE82 1336 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 TARSL2A2RTX5 802 aaKnown RBP11.46□□□□□ -0.57
RTN3-206ENST00000377819 INO80B-WBP1J3KQ70 363 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 WDR47O94967 919 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 SLC9A1P19634 815 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 ARL4DP49703 201 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 AK2P54819 239 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 IGBP1P78318 339 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 DRP2Q13474 957 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 CEP55Q53EZ4 464 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 DEPDC1Q5TB30 811 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 THEMIS2Q5TEJ8 643 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 KRT77Q7Z794 578 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 TBC1D19Q8N5T2 526 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 ENAHQ8N8S7 591 aaPredicted RBP11.46□□□□□ -0.57
RTN3-206ENST00000377819 GINS4Q9BRT9 223 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 INO80BQ9C086 356 aaPredicted RBP11.46□□□□□ -0.57
RTN3-206ENST00000377819 CHPF2Q9P2E5 772 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms