RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 MROH7Q68CQ1 1323 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 WDR81Q562E7 1941 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 H0YGN5 161 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 CEP290O15078 2479 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 KPNA6O60684 536 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 UBA1P22314 1058 aaKnown RBP19.4■□□□□ 0.7
CLN3-203ENST00000357806 SREBF1P36956 1147 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 NLRP5P59047 1200 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 LAMC2Q13753 1193 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 JAKMIP3Q5VZ66 844 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 DHX37Q8IY37 1157 aaKnown RBP19.4■□□□□ 0.7
CLN3-203ENST00000357806 IL27Q8NEV9 243 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 GPRASP2Q96D09 838 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 CDHR1Q96JP9 859 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 TBC1D32Q96NH3 1257 aa19.4■□□□□ 0.7
CLN3-203ENST00000357806 KAT6AQ92794 2004 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 SPATA31C2B4DYI2 1134 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 CTDNEP1O95476 244 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 GGPS1O95749 300 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 MMP3P08254 477 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 MYL3P08590 195 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 XBP1P17861 261 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 PURAQ00577 322 aaKnown RBP19.39■□□□□ 0.69
CLN3-203ENST00000357806 AFG1LQ8WV93 481 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 WASF1Q92558 559 aa19.39■□□□□ 0.69
CLN3-203ENST00000357806 ST18O60284 1047 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 SP2Q02086 613 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 SEMA3FQ13275 785 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 MTMR1Q13613 665 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 NEDD9Q14511 834 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 CELF3Q5SZQ8 465 aaKnown RBP19.38■□□□□ 0.69
CLN3-203ENST00000357806 MYSM1Q5VVJ2 828 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 PPTC7Q8NI37 304 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 AIFM3Q96NN9 605 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 MTG1Q9BT17 334 aaPredicted RBP19.38■□□□□ 0.69
CLN3-203ENST00000357806 BACH2Q9BYV9 841 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 ORC3Q9UBD5 711 aaPredicted RBP19.38■□□□□ 0.69
CLN3-203ENST00000357806 UBIAD1Q9Y5Z9 338 aa19.38■□□□□ 0.69
CLN3-203ENST00000357806 ARVCFO00192 962 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 PQBP1O60828 265 aaKnown RBP19.37■□□□□ 0.69
CLN3-203ENST00000357806 ITGB5P18084 799 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 GALNT17Q6IS24 598 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 NSUN7Q8NE18 718 aaKnown RBP19.37■□□□□ 0.69
CLN3-203ENST00000357806 ZSCAN31Q96LW9 406 aaPredicted RBP19.37■□□□□ 0.69
CLN3-203ENST00000357806 SEZ6LQ9BYH1 1024 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 MLXIPQ9HAP2 919 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 PRKAG2Q9UGJ0 569 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 ZMYND8Q9ULU4 1186 aaPredicted RBP19.37■□□□□ 0.69
CLN3-203ENST00000357806 PCDHA4Q9UN74 947 aa19.37■□□□□ 0.69
CLN3-203ENST00000357806 MYH9P35579 1960 aaKnown RBP19.36■□□□□ 0.69
CLN3-203ENST00000357806 MAFGO15525 162 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 ARHGAP4P98171 946 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 ITGA7Q13683 1181 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 DGKDQ16760 1214 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 ANKRD33Q7Z3H0 272 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 DAGLBQ8NCG7 672 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 GIMAP8Q8ND71 665 aaPredicted RBP19.36■□□□□ 0.69
CLN3-203ENST00000357806 RASGRP4Q8TDF6 673 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 SPATA33Q96N06 139 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 TOX2Q96NM4 488 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 SENP7Q9BQF6 1050 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 MXRA8Q9BRK3 442 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 JADE2Q9NQC1 790 aa19.36■□□□□ 0.69
CLN3-203ENST00000357806 SH2B1Q9NRF2 756 aaPredicted RBP19.36■□□□□ 0.69
CLN3-203ENST00000357806 TRIP12Q14669 1992 aaPredicted RBP19.36■□□□□ 0.69
CLN3-203ENST00000357806 DCDC2CA8MYV0 355 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 ADAMTS3O15072 1205 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 SORBS3O60504 671 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 SYN1P17600 705 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 TLE2Q04725 743 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 ST3GAL1Q11201 340 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 METTL7BQ6UX53 244 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 BLIDQ8IZY5 108 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 PRDM5Q9NQX1 630 aaPredicted RBP19.35■□□□□ 0.69
CLN3-203ENST00000357806 TANC1Q9C0D5 1861 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 NOP56O00567 594 aaKnown RBP19.35■□□□□ 0.69
CLN3-203ENST00000357806 CLTBP09497 229 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 ZNF76P36508 570 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 CDK7P50613 346 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 PSMC6P62333 389 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 HSDL1Q3SXM5 330 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 CEP55Q53EZ4 464 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 CYFIP1Q7L576 1253 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 CCDC83Q8IWF9 413 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 SLC43A3Q8NBI5 491 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 CRYGNQ8WXF5 182 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 ALG1Q9BT22 464 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 PDLIM7Q9NR12 457 aa19.35■□□□□ 0.69
CLN3-203ENST00000357806 TLR3O15455 904 aaKnown RBP19.34■□□□□ 0.69
CLN3-203ENST00000357806 DTNBO60941 627 aa19.34■□□□□ 0.69
CLN3-203ENST00000357806 CYP3A4P08684 503 aa19.34■□□□□ 0.69
CLN3-203ENST00000357806 HOXD8P13378 290 aaPredicted RBP19.34■□□□□ 0.69
CLN3-203ENST00000357806 KCNA2P16389 499 aa19.34■□□□□ 0.69
CLN3-203ENST00000357806 PHF20Q9BVI0 1012 aa19.34■□□□□ 0.69
CLN3-203ENST00000357806 KATNAL1Q9BW62 490 aa19.34■□□□□ 0.69
CLN3-203ENST00000357806 GRIN2DO15399 1336 aa19.33■□□□□ 0.69
CLN3-203ENST00000357806 JAK2O60674 1132 aa19.33■□□□□ 0.68
CLN3-203ENST00000357806 FDPSP14324 419 aaKnown RBP19.33■□□□□ 0.68
CLN3-203ENST00000357806 NIPA1Q7RTP0 329 aa19.33■□□□□ 0.68
CLN3-203ENST00000357806 FAM126BQ8IXS8 530 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms