RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CNOT7Q9UIV1 285 aaKnown RBP16.32■□□□□ 0.2
COL17A1-201ENST00000353479 TLR3O15455 904 aaKnown RBP16.32■□□□□ 0.2
COL17A1-201ENST00000353479 MYL1P05976 194 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 SLC15A2Q16348 729 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 CFAP221Q4G0U5 840 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 CCDC105Q8IYK2 499 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 MTA3Q9BTC8 594 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 RNF146Q9NTX7 359 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 PTPN21Q16825 1174 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 DISC1Q9NRI5 854 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 PPLO60437 1756 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 ABL1P00519 1130 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 QRICH1Q2TAL8 776 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 SCYL2Q6P3W7 929 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 ZBTB33Q86T24 672 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 KIAA1524Q8TCG1 905 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 TMEM206Q9H813 350 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 FBXO40Q9UH90 709 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 ABCB11O95342 1321 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 EXOC8Q8IYI6 725 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 NT5C1BQ96P26 610 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 OSBPL5Q9H0X9 879 aaPredicted RBP16.31■□□□□ 0.2
COL17A1-201ENST00000353479 POTEMA6NI47 508 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 FKBP3Q00688 224 aaKnown RBP16.31■□□□□ 0.2
COL17A1-201ENST00000353479 STOX1Q6ZVD7 989 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 NUB1Q9Y5A7 615 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 FLT1P17948 1338 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 RIOK3O14730 519 aaKnown RBP16.31■□□□□ 0.2
COL17A1-201ENST00000353479 DPEP1P16444 411 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 EEF1GP26641 437 aaKnown RBP16.31■□□□□ 0.2
COL17A1-201ENST00000353479 CASP14P31944 242 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 RCAN1P53805 252 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 STXBP2Q15833 593 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 KMT5BQ4FZB7 885 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 PIGOQ8TEQ8 1089 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 STIM2Q9P246 746 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 TTLL3Q9Y4R7 772 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 ZNF609O15014 1411 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 CAPN9O14815 690 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 AFPP02771 609 aaKnown RBP16.31■□□□□ 0.2
COL17A1-201ENST00000353479 GAS2L3Q86XJ1 694 aa16.31■□□□□ 0.2
COL17A1-201ENST00000353479 STAM2O75886 525 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 HDXQ7Z353 690 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 CCDC125Q86Z20 511 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 VPS18Q9P253 973 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 SRGAP2CP0DJJ0 459 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 IFT20Q8IY31 132 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 STAG2Q8N3U4 1231 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 ANKRD36BP1Q96IX9 119 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 KDM4FA0A1W2PPD8 638 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 RFX5P48382 616 aaPredicted RBP16.3■□□□□ 0.2
COL17A1-201ENST00000353479 MFAP3P55082 362 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 OSTNP61366 133 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 LONRF2Q1L5Z9 754 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 ABI1Q8IZP0 508 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 SFI1A8K8P3 1242 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 TDRD7Q8NHU6 1098 aaKnown RBP16.3■□□□□ 0.2
COL17A1-201ENST00000353479 PLEKHA4Q9H4M7 779 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 PPP2R2CQ9Y2T4 447 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 DEFB132Q7Z7B7 95 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 PRPF38AQ8NAV1 312 aaKnown RBP16.3■□□□□ 0.2
COL17A1-201ENST00000353479 PCDHB4Q9Y5E5 795 aa16.3■□□□□ 0.2
COL17A1-201ENST00000353479 DDIT3P35638 169 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 LRRC8AQ8IWT6 810 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 TRIM58Q8NG06 486 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 BARHL2Q9NY43 387 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 CD2APQ9Y5K6 639 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 NDC80O14777 642 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 PPP1R18Q6NYC8 613 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 IQCA1LA6NCM1 817 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 IKBKBO14920 756 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 XPOTO43592 962 aaKnown RBP16.29■□□□□ 0.2
COL17A1-201ENST00000353479 TFAMQ00059 246 aaKnown RBP16.29■□□□□ 0.2
COL17A1-201ENST00000353479 PTK2Q05397 1052 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 PPP2R5DQ14738 602 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 STYK1Q6J9G0 422 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 CDC42EP5Q6NZY7 148 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 BANK1Q8NDB2 785 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 ARHGAP4P98171 946 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 MAN2A1Q16706 1144 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 NSUN6Q8TEA1 469 aaKnown RBP16.29■□□□□ 0.2
COL17A1-201ENST00000353479 ZNF512BQ96KM6 892 aaPredicted RBP16.29■□□□□ 0.2
COL17A1-201ENST00000353479 NLRP4Q96MN2 994 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 RWDD2AQ9UIY3 292 aa16.29■□□□□ 0.2
COL17A1-201ENST00000353479 POLR1AO95602 1720 aaPredicted RBP16.29■□□□□ 0.2
COL17A1-201ENST00000353479 PSMD14O00487 310 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 H2AFZP0C0S5 128 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 GOLGA8FQ08AF8 430 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 GOLGA8DPQ0D2H9 430 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 RESP18Q5W5W9 173 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 H2AFVQ71UI9 128 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 SGMS1Q86VZ5 419 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 SAMSN1Q9NSI8 373 aaKnown RBP16.28■□□□□ 0.2
COL17A1-201ENST00000353479 SAR1BQ9Y6B6 198 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 KCNK3O14649 394 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 NSFP46459 744 aaKnown RBP16.28■□□□□ 0.2
COL17A1-201ENST00000353479 JAK3P52333 1124 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 HMGCS2P54868 508 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 PSMD2Q13200 908 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 RSBN1LQ6PCB5 846 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms