RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IL17RAQ96F46 866 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 TMEM87BQ96K49 555 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 TLL2Q9Y6L7 1015 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 TARBP1Q13395 1621 aaKnown RBP9.27□□□□□ -0.93
HMGB1-203ENST00000341423 PDXDC1Q6P996 788 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 GLMNQ92990 594 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 FAM149B1Q96BN6 582 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 RMND1Q9NWS8 449 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 MAP3K1Q13233 1512 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 RRAGBQ5VZM2 374 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 EFHBQ8N7U6 833 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 TDRD5Q8NAT2 981 aaKnown RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 STAG1Q8WVM7 1258 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 NUP62CLQ9H1M0 184 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 CLSTN2Q9H4D0 955 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 PRR36Q9H6K5 1346 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 HELLSQ9NRZ9 838 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SLC38A7Q9NVC3 462 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 MYMKA6NI61 221 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 GPM6BQ13491 265 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SURF1Q15526 300 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 PTGISQ16647 500 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 MAPK6Q16659 721 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SLC10A5Q5PT55 438 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 C6orf163Q5TEZ5 329 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 IL17REQ8NFR9 667 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 C2orf40Q9H1Z8 148 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 TMEM260Q9NX78 707 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SAMD9LQ8IVG5 1584 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 CD163L1Q9NR16 1453 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SALL3Q9BXA9 1300 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SMCO2A6NFE2 343 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 GCKP35557 465 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 JAK3P52333 1124 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 BACE1P56817 501 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 KRT85P78386 507 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 PUS10Q3MIT2 529 aaKnown RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 DAB2IPQ5VWQ8 1189 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 ZNF302Q9NR11 478 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 MRPL17Q9NRX2 175 aaKnown RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 LRRC7Q96NW7 1537 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 PATL2C9JE40 543 aaKnown RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 LAD1O00515 517 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 KCNQ3O43525 872 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 CCNT1O60563 726 aaKnown RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 CKMP06732 381 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 MYL4P12829 197 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 PDIA3P30101 505 aaKnown RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 TXKP42681 527 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 ATP8B2P98198 1209 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 CCINQ13939 588 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 SYCP2LQ5T4T6 812 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 BROXQ5VW32 411 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 AGTPBP1Q9UPW5 1226 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 HPS5Q9UPZ3 1129 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 MAST1Q9Y2H9 1570 aa9.26□□□□□ -0.93
HMGB1-203ENST00000341423 KDM6AO15550 1401 aaPredicted RBP9.26□□□□□ -0.93
HMGB1-203ENST00000341423 FAM47DPA6NHR8 397 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 MAN1A1P33908 653 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 CACNB1Q02641 598 aaPredicted RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 TRIM48Q8IWZ4 208 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 CFAP36Q96G28 342 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 RUFY1Q96T51 708 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 USP25Q9UHP3 1055 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 ARHGEF5Q12774 1597 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 CFIP05156 583 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 NT5C2P49902 561 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 FAM83AQ86UY5 434 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 JAMLQ86YT9 394 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 ZNF713Q8N859 430 aaPredicted RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 SDR42E1Q8WUS8 393 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 SREK1Q8WXA9 508 aaKnown RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 PTCH2Q9Y6C5 1203 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 HNRNPDLO14979 420 aaKnown RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 EXOC3O60645 756 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 PHKA1P46020 1223 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 IRX4P78413 519 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 MRPS5P82675 430 aaKnown RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 KLHL10Q6JEL2 608 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 IFNL1Q8IU54 200 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 ERAP1Q9NZ08 941 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 ZNF197O14709 1029 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 GIPC1O14908 333 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 EPB41P11171 864 aaKnown RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 TNNT1P13805 278 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 SF3B3Q15393 1217 aaKnown RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 TAF2Q6P1X5 1199 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 DHX32Q7L7V1 743 aaKnown RBP9.25□□□□□ -0.93
HMGB1-203ENST00000341423 SEPT1Q8WYJ6 367 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 STK39Q9UEW8 545 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 FAM169AQ9Y6X4 670 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 INPP4BO15327 924 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 SERPINC1P01008 464 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 ERVK-9P63128 1117 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 ERVK-24P63145 666 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 PFKPQ01813 784 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 FAM110CQ1W6H9 321 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 TLK2Q86UE8 772 aa9.25□□□□□ -0.93
HMGB1-203ENST00000341423 SEPT5Q99719 369 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 709.8 ms