RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 LSP1P33241 339 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 SIK1P57059 783 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 GUCY1A3Q02108 690 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 EHHADHQ08426 723 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 LRRC41Q15345 812 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 FAM153CQ494X1 144 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 C3orf67Q6ZVT6 689 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 RNPC3Q96LT9 517 aaKnown RBP16.11■□□□□ 0.17
SSBP3-201ENST00000326956 CEP89Q96ST8 783 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 MMTAG2Q9BU76 263 aaKnown RBP16.11■□□□□ 0.17
SSBP3-201ENST00000326956 POLD4Q9HCU8 107 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 FAM153AQ9UHL3 310 aa16.11■□□□□ 0.17
SSBP3-201ENST00000326956 A0A1B0GUL6 1792 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 ZSCAN5CA6NGD5 496 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 MEFVO15553 781 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 POLR2FP61218 127 aaKnown RBP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 RAPGEF1Q13905 1077 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 IQCKQ8N0W5 287 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 SNX29Q8TEQ0 813 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 EPN3Q9H201 632 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 CEP72Q9P209 647 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 GRID2IPA4D2P6 1211 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 SSBP05455 408 aaKnown RBP eCLIP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 RPS8P62241 208 aaKnown RBP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 GRB10Q13322 594 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 KIAA0753Q2KHM9 967 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 SLC35G1Q2M3R5 365 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 CEP85LQ5SZL2 805 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 KLHL7Q8IXQ5 586 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 MYOCDQ8IZQ8 938 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 LSM14BQ9BX40 385 aaKnown RBP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 SPZ1Q9BXG8 430 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 BMP2KQ9NSY1 1161 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-201ENST00000326956 COL4A3BPQ9Y5P4 624 aa16.1■□□□□ 0.17
SSBP3-201ENST00000326956 ZNF233A6NK53 670 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 BAG3O95817 575 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 FAM83BQ5T0W9 1011 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 ARFGAP2Q8N6H7 521 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 SLC44A5Q8NCS7 719 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 TBC1D5Q92609 795 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 ANKRD2Q9GZV1 360 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 PPP1R37O75864 691 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 HPDP32754 393 aaPredicted RBP16.09■□□□□ 0.17
SSBP3-201ENST00000326956 FKBP3Q00688 224 aaKnown RBP16.09■□□□□ 0.17
SSBP3-201ENST00000326956 PSMD2Q13200 908 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 SAMD1Q6SPF0 538 aaPredicted RBP16.09■□□□□ 0.17
SSBP3-201ENST00000326956 DDX12PQ92771 950 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 ATP6V1G3Q96LB4 118 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 BLOC1S4Q9NUP1 217 aa16.09■□□□□ 0.17
SSBP3-201ENST00000326956 HMGB1P1B2RPK0 211 aaPredicted RBP16.08■□□□□ 0.17
SSBP3-201ENST00000326956 LDHBP07195 334 aaKnown RBP16.08■□□□□ 0.17
SSBP3-201ENST00000326956 ORC2Q13416 577 aaPredicted RBP16.08■□□□□ 0.17
SSBP3-201ENST00000326956 ASTE1Q2TB18 679 aaPredicted RBP16.08■□□□□ 0.17
SSBP3-201ENST00000326956 PROM2Q8N271 834 aa16.08■□□□□ 0.17
SSBP3-201ENST00000326956 GPATCH11Q8N954 259 aa16.08■□□□□ 0.17
SSBP3-201ENST00000326956 CABS1Q96KC9 395 aa16.08■□□□□ 0.17
SSBP3-201ENST00000326956 MYCBPQ99417 103 aaPredicted RBP16.08■□□□□ 0.17
SSBP3-201ENST00000326956 PACSIN2Q9UNF0 486 aaPredicted RBP16.08■□□□□ 0.17
SSBP3-201ENST00000326956 KLHL30Q0D2K2 578 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 NAB2Q15742 525 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 NAA35Q5VZE5 725 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 SH3RF3Q8TEJ3 882 aaPredicted RBP16.08■□□□□ 0.16
SSBP3-201ENST00000326956 TGFBRAP1Q8WUH2 860 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 NCAPGQ9BPX3 1015 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 SAP30BPQ9UHR5 308 aaKnown RBP16.08■□□□□ 0.16
SSBP3-201ENST00000326956 ATP6V0A2Q9Y487 856 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 E7EVH7 732 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 CLSTN1O94985 981 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 KLRC1P26715 233 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 HOXA7P31268 230 aaPredicted RBP16.08■□□□□ 0.16
SSBP3-201ENST00000326956 HSPA2P54652 639 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 SWT1Q5T5J6 900 aaKnown RBP16.08■□□□□ 0.16
SSBP3-201ENST00000326956 HGSNATQ68CP4 663 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 USP17L2Q6R6M4 530 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 LRRC55Q6ZSA7 311 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 ARHGAP27Q6ZUM4 889 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 MREGQ8N565 214 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 CASKIN2Q8WXE0 1202 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 RAD54LQ92698 747 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 PLAAQ9Y263 795 aa16.08■□□□□ 0.16
SSBP3-201ENST00000326956 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.08■□□□□ 0.16
SSBP3-201ENST00000326956 RPS6KA1Q15418 735 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 CDC37Q16543 378 aaPredicted RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 ODF2Q5BJF6 829 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 ZNF473Q8WTR7 871 aaKnown RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 SYN2Q92777 582 aaPredicted RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 ADAMTS1Q9UHI8 967 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 ATXN2Q99700 1313 aaKnown RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 NHSL1Q5SYE7 1610 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 POTEMA6NI47 508 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 GCOM1H8Y6P7 765 aaPredicted RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 KCNK3O14649 394 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 MYZAPP0CAP1 466 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 MDH1P40925 334 aaKnown RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 KCNMA1Q12791 1236 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 ITPK1Q13572 414 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 ASIC2Q16515 512 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 SLC18A3Q16572 532 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 PTGISQ16647 500 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 CD302Q8IX05 232 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms