RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 PRDM5Q9NQX1 630 aaPredicted RBP13.8□□□□□ -0.2
SCFD1-201ENST00000311943 ORC3Q9UBD5 711 aaPredicted RBP13.8□□□□□ -0.2
SCFD1-201ENST00000311943 MMP3P08254 477 aa13.79□□□□□ -0.2
SCFD1-201ENST00000311943 MRPL12P52815 198 aaKnown RBP13.79□□□□□ -0.2
SCFD1-201ENST00000311943 MDM2Q00987 491 aaPredicted RBP13.79□□□□□ -0.2
SCFD1-201ENST00000311943 KAT2BQ92831 832 aa13.79□□□□□ -0.2
SCFD1-201ENST00000311943 HTATIP2Q9BUP3 242 aa13.79□□□□□ -0.2
SCFD1-201ENST00000311943 TRPV6Q9H1D0 765 aa13.79□□□□□ -0.2
SCFD1-201ENST00000311943 LIMCH1Q9UPQ0 1083 aa13.79□□□□□ -0.2
SCFD1-201ENST00000311943 CDH23Q9H251 3354 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 UMODL1Q5DID0 1318 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 SPATA31C2B4DYI2 1134 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 WNT7AO00755 349 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 DEXIO95424 95 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 NR5A1Q13285 461 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 CHRDL2Q6WN34 429 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 DHX37Q8IY37 1157 aaKnown RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 TRIM22Q8IYM9 498 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 CRYGNQ8WXF5 182 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 GLT1D1Q96MS3 346 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 COLQQ9Y215 455 aaPredicted RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 UBIAD1Q9Y5Z9 338 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 A6NJR5 290 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 M0R2N6 131 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 DDX39AO00148 427 aaKnown RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 GH1P01241 217 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 NKX3-2P78367 333 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 ARHGAP4P98171 946 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 ZNF200P98182 395 aaPredicted RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 FAAP100Q0VG06 881 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 TRAF1Q13077 416 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 ANKRD1Q15327 319 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 CELF3Q5SZQ8 465 aaKnown RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 REXO1Q8N1G1 1221 aaKnown RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 ZBTB10Q96DT7 871 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 ALG1Q9BT22 464 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 SPC25Q9HBM1 224 aa13.78□□□□□ -0.2
SCFD1-201ENST00000311943 TRMT13Q9NUP7 481 aaKnown RBP13.78□□□□□ -0.2
SCFD1-201ENST00000311943 LOC102724159A0A0B4J2E5 919 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 KCNA2P16389 499 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 ITGB3BPQ13352 177 aaPredicted RBP13.77□□□□□ -0.21
SCFD1-201ENST00000311943 ITGA7Q13683 1181 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 SNX17Q15036 470 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 PWP2Q15269 919 aaKnown RBP13.77□□□□□ -0.21
SCFD1-201ENST00000311943 PPP1R18Q6NYC8 613 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 SPATA33Q96N06 139 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 C6orf50Q9HD87 102 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 PDLIM7Q9NR12 457 aa13.77□□□□□ -0.21
SCFD1-201ENST00000311943 MOXD2PA6NHM9 499 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 B4GALT4O60513 344 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 TDP2O95551 362 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 SREBF1P36956 1147 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 CDK7P50613 346 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 MTMR1Q13613 665 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 NBPF20Q3BBV1 942 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 PCSK9Q8NBP7 692 aaKnown RBP13.76□□□□□ -0.21
SCFD1-201ENST00000311943 MPHOSPH6Q99547 160 aaKnown RBP13.76□□□□□ -0.21
SCFD1-201ENST00000311943 MXRA8Q9BRK3 442 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 TSEN34Q9BSV6 310 aaKnown RBP13.76□□□□□ -0.21
SCFD1-201ENST00000311943 PHF20Q9BVI0 1012 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 KCNH7Q9NS40 1196 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 IGLV3-22A0A075B6J6 115 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 ESYT2A0FGR8 921 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 CYP2C9P11712 490 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 SAMD3Q8N6K7 520 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 TBCKQ8TEA7 893 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 TMX3Q96JJ7 454 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 CTAGE1Q96RT6 745 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 PPP1R12CQ9BZL4 782 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 MLXIPQ9HAP2 919 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 JADE2Q9NQC1 790 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 PCDHA4Q9UN74 947 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 Q9Y3F1 56 aa13.76□□□□□ -0.21
SCFD1-201ENST00000311943 B4DLN1 442 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 ARVCFO00192 962 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 FIBPO43427 364 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 ICAM3P32942 547 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 MAGEA10P43363 369 aaPredicted RBP13.75□□□□□ -0.21
SCFD1-201ENST00000311943 EPHB4P54760 987 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 INF2Q27J81 1249 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 FAM47CQ5HY64 1035 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 UTP14CQ5TAP6 766 aaKnown RBP13.75□□□□□ -0.21
SCFD1-201ENST00000311943 FAM126BQ8IXS8 530 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 BLIDQ8IZY5 108 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 C16orf70Q9BSU1 422 aa13.75□□□□□ -0.21
SCFD1-201ENST00000311943 RBM27Q9P2N5 1060 aaKnown RBP13.75□□□□□ -0.21
SCFD1-201ENST00000311943 hCG_1984214I3L0E3 225 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 CPT1AP50416 773 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 RABEP1Q15276 862 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 PRR16Q569H4 304 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 PRPF38BQ5VTL8 546 aaKnown RBP13.74□□□□□ -0.21
SCFD1-201ENST00000311943 TRMT1LQ7Z2T5 733 aaKnown RBP13.74□□□□□ -0.21
SCFD1-201ENST00000311943 ZNF713Q8N859 430 aaPredicted RBP13.74□□□□□ -0.21
SCFD1-201ENST00000311943 BADQ92934 168 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 WNT8BQ93098 351 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 LENG9Q96B70 501 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 GPR20Q99678 358 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 MAF1Q9H063 256 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 GSTTP1A0A1W2PQM5 241 aa13.74□□□□□ -0.21
SCFD1-201ENST00000311943 BTBD18B2RXH4 712 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms