RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 CCDC68Q9H2F9 335 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 POGZQ7Z3K3 1410 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 AFPP02771 609 aaKnown RBP13.7□□□□□ -0.22
USP38-201ENST00000307017 ARHGAP4P98171 946 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 ZNF211Q13398 564 aaPredicted RBP13.7□□□□□ -0.22
USP38-201ENST00000307017 IL31Q6EBC2 164 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 PPIP5K2O43314 1243 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 HADHAP40939 763 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 BTDP43251 543 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 IQCB1Q15051 598 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 RINT1Q6NUQ1 792 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 SPATS2LQ9NUQ6 558 aaKnown RBP13.7□□□□□ -0.22
USP38-201ENST00000307017 GCNT4Q9P109 453 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 TSKSQ9UJT2 592 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 PCDHA5Q9Y5H7 936 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 NSD2O96028 1365 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 SETSIPP0DME0 302 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 NR2F2P24468 414 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 EIF4A3P38919 411 aaKnown RBP13.7□□□□□ -0.22
USP38-201ENST00000307017 CATSPER3Q86XQ3 398 aa13.7□□□□□ -0.22
USP38-201ENST00000307017 SPDYE1Q8NFV5 336 aaPredicted RBP13.7□□□□□ -0.22
USP38-201ENST00000307017 ZMAT2Q96NC0 199 aaKnown RBP13.7□□□□□ -0.22
USP38-201ENST00000307017 TFAMQ00059 246 aaKnown RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 PROSER3Q2NL68 480 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 LPIN2Q92539 896 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 PASKQ96RG2 1323 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 NEURL1BA8MQ27 555 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 SLC8A1P32418 973 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 MTM1Q13496 603 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 EAF2Q96CJ1 260 aaPredicted RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 ITM2BQ9Y287 266 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 PCDHA13Q9Y5I0 950 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 IQGAP2Q13576 1575 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 PHKA1P46020 1223 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 IBTKQ9P2D0 1353 aaPredicted RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 LOC102724159A0A0B4J2E5 919 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 HNRNPCL2B2RXH8 293 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 HNRNPCL1O60812 293 aaKnown RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 CTSWP56202 376 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 PWP2Q15269 919 aaKnown RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 TRPV6Q9H1D0 765 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 Q9H521 79 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 SLC38A10Q9HBR0 1119 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 SARS2Q9NP81 518 aaKnown RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 MOSPD1Q9UJG1 213 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 ZNF711Q9Y462 761 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 PARD3Q8TEW0 1356 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 CTTNQ14247 550 aaKnown RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 ATL3Q6DD88 541 aa13.69□□□□□ -0.22
USP38-201ENST00000307017 PSPC1Q8WXF1 523 aaKnown RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 SOS2Q07890 1332 aaPredicted RBP13.69□□□□□ -0.22
USP38-201ENST00000307017 SRGAP2CP0DJJ0 459 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 NSFP46459 744 aaKnown RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 KRT80Q6KB66 452 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 RWDD4Q6NW29 188 aaKnown RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 C16orf87Q6PH81 154 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 FANCBQ8NB91 859 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 GREM2Q9H772 168 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 KLHL11Q9NVR0 708 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 PTPRKQ15262 1439 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 PCDH11XQ9BZA7 1347 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 PCDH11YQ9BZA8 1340 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 HLA-DPA1P20036 260 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 SOX5P35711 763 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 ETF1P62495 437 aaKnown RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 BBS9Q3SYG4 887 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 PDCD6IPQ8WUM4 868 aaKnown RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 SUGT1Q9Y2Z0 365 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 CCDC78A2IDD5 438 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 S100BP04271 92 aaPredicted RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 GFPT1Q06210 699 aaPredicted RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 GGCXP38435 758 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 TUBB2AQ13885 445 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 NUGGCQ68CJ6 796 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 NCLNQ969V3 563 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 TUBB2BQ9BVA1 445 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 CCPG1Q9ULG6 757 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 RAD17O75943 681 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 TUBBP07437 444 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 CAPRIN1Q14444 709 aaKnown RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 PCDHB6Q9Y5E3 794 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 ZMYM4Q5VZL5 1548 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 CARMIL3Q8ND23 1372 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 TRIM67Q6ZTA4 783 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 NEK8Q86SG6 692 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 RETREG2Q8NC44 543 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 TDRD7Q8NHU6 1098 aaKnown RBP13.68□□□□□ -0.22
USP38-201ENST00000307017 DCAF5Q96JK2 942 aa13.68□□□□□ -0.22
USP38-201ENST00000307017 HNRNPDLO14979 420 aaKnown RBP13.67□□□□□ -0.22
USP38-201ENST00000307017 TOM1O60784 492 aa13.67□□□□□ -0.22
USP38-201ENST00000307017 TRAF1Q13077 416 aa13.67□□□□□ -0.22
USP38-201ENST00000307017 CERKLQ49MI3 558 aaPredicted RBP13.67□□□□□ -0.22
USP38-201ENST00000307017 SLC13A1Q9BZW2 595 aa13.67□□□□□ -0.22
USP38-201ENST00000307017 DAAM1Q9Y4D1 1078 aa13.67□□□□□ -0.22
USP38-201ENST00000307017 TOP2BQ02880 1626 aa13.67□□□□□ -0.22
USP38-201ENST00000307017 PSMC1P62191 440 aaKnown RBP13.67□□□□□ -0.22
USP38-201ENST00000307017 IFNLR1Q8IU57 520 aaPredicted RBP13.67□□□□□ -0.22
USP38-201ENST00000307017 FAM193BQ96PV7 902 aaPredicted RBP13.67□□□□□ -0.22
USP38-201ENST00000307017 AFF4Q9UHB7 1163 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms