RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 MSH4O15457 936 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CCP110O43303 1012 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 ABL1P00519 1130 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CCDC175P0C221 793 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 POLR2MP0CAP2 368 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 ALAS1P13196 640 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CASQ1P31415 396 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 INPP5BP32019 993 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 GMPSP49915 693 aaPredicted RBP12.78□□□□□ -0.36
CUX1-202ENST00000292538 COASYQ13057 564 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 ENOX2Q16206 610 aaKnown RBP12.78□□□□□ -0.36
CUX1-202ENST00000292538 MAEAQ7L5Y9 396 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CHURC1Q8WUH1 139 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 GLT8D2Q9H1C3 349 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 VCPKMTQ9H867 229 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 ABHD10Q9NUJ1 306 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 LUC7L2Q9Y383 392 aaKnown RBP12.78□□□□□ -0.36
CUX1-202ENST00000292538 ATRNL1Q5VV63 1379 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 NPM3O75607 178 aaKnown RBP12.78□□□□□ -0.36
CUX1-202ENST00000292538 AGBL3Q8NEM8 1001 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CCPG1Q9ULG6 757 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 PBX1P40424 430 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 AP3B2Q13367 1082 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 ELF2Q15723 593 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 ARHGAP29Q52LW3 1261 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 FAM26FQ5R3K3 315 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 LDHDQ86WU2 507 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 SLFN12Q8IYM2 578 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 BHMT2Q9H2M3 363 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 THAP9Q9H5L6 903 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 RAVER2Q9HCJ3 691 aaKnown RBP12.77□□□□□ -0.36
CUX1-202ENST00000292538 CNOT7Q9UIV1 285 aaKnown RBP12.77□□□□□ -0.36
CUX1-202ENST00000292538 DNM3Q9UQ16 869 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 COL4A5P29400 1685 aa12.77□□□□□ -0.36
CUX1-202ENST00000292538 LGALS16A8MUM7 142 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 NFKBIEO00221 500 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 FLOT1O75955 427 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 ASNSP08243 561 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 ERVK-24P63145 666 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 PANX2Q96RD6 677 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 SH2D3AQ9BRG2 576 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 CRACR2AQ9BSW2 395 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 NT5C3AQ9H0P0 336 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 KCNMB3Q9NPA1 279 aa12.77□□□□□ -0.37
CUX1-202ENST00000292538 ABCB11O95342 1321 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 LRRC10BA6NIK2 292 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 EML1O00423 815 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 EEF1GP26641 437 aaKnown RBP12.76□□□□□ -0.37
CUX1-202ENST00000292538 NCBP1Q09161 790 aaKnown RBP12.76□□□□□ -0.37
CUX1-202ENST00000292538 ORC2Q13416 577 aaPredicted RBP12.76□□□□□ -0.37
CUX1-202ENST00000292538 CCDC40Q4G0X9 1142 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 FKBP15Q5T1M5 1219 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 NBPF12Q5TAG4 269 aaPredicted RBP12.76□□□□□ -0.37
CUX1-202ENST00000292538 MYOCDQ8IZQ8 938 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 PDCL2Q8N4E4 241 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 MNS1Q8NEH6 495 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 SLC16A10Q8TF71 515 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 ZKSCAN4Q969J2 545 aaPredicted RBP12.76□□□□□ -0.37
CUX1-202ENST00000292538 ZBTB9Q96C00 473 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 HOOK2Q96ED9 719 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 SPDYE4A6NLX3 237 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 RSPH10B2B2RC85 870 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 KIF2AO00139 706 aaPredicted RBP12.76□□□□□ -0.37
CUX1-202ENST00000292538 FANCGO15287 622 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 RSPH10BP0C881 870 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 MTMR2Q13614 643 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 PLS1Q14651 629 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 TNIP1Q15025 636 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 ERCC6LQ2NKX8 1250 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 TMEM119Q4V9L6 283 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 ZNF569Q5MCW4 686 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 HAUS3Q68CZ6 603 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 TRIM65Q6PJ69 517 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 DLK2Q6UY11 383 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 ERMNQ8TAM6 284 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 DEFB129Q9H1M3 183 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 HACL1Q9UJ83 578 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 SAMM50Q9Y512 469 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 C10orf71Q711Q0 1435 aa12.76□□□□□ -0.37
CUX1-202ENST00000292538 FAM170AA1A519 330 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 SORBS3O60504 671 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 SLU7O95391 586 aaKnown RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 FOSP01100 380 aaPredicted RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 GTF2F1P35269 517 aaKnown RBP eCLIP12.75□□□□□ -0.372e-8■■■□□ 18.7
CUX1-202ENST00000292538 SREBF1P36956 1147 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 SPP2Q13103 211 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 LRCH2Q5VUJ6 765 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 CCDC65Q8IXS2 484 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 ETNPPLQ8TBG4 499 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 SMCR8Q8TEV9 937 aaPredicted RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 NOC3LQ8WTT2 800 aaKnown RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 PURBQ96QR8 312 aaKnown RBP12.75□□□□□ -0.37
CUX1-202ENST00000292538 TSG101Q99816 390 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 TRIM10Q9UDY6 481 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 GUCA1BQ9UMX6 200 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 ADGRG1Q9Y653 693 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 NFIBO00712 420 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 FAM114A1Q8IWE2 563 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 LENG9Q96B70 501 aa12.75□□□□□ -0.37
CUX1-202ENST00000292538 DNAJC19Q96DA6 116 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms