RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 NTRK3Q16288 839 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 C21orf62-AS1Q17RA5 79 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 GPATCH4Q5T3I0 446 aaKnown RBP3.35□□□□□ -1.87
HERC4-201ENST00000277817 ZNF530Q6P9A1 599 aaPredicted RBP3.35□□□□□ -1.87
HERC4-201ENST00000277817 SYNE3Q6ZMZ3 975 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 LRRC69Q6ZNQ3 347 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 EEPD1Q7L9B9 569 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 UBR7Q8N806 425 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 C1orf162Q8NEQ5 155 aaPredicted RBP3.35□□□□□ -1.87
HERC4-201ENST00000277817 WDR66Q8TBY9 1149 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 ZC3H10Q96K80 434 aaKnown RBP3.35□□□□□ -1.87
HERC4-201ENST00000277817 ZNF576Q9H609 170 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 GRPEL1Q9HAV7 217 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 TNNQ9UQP3 1299 aa3.35□□□□□ -1.87
HERC4-201ENST00000277817 NPC1L1Q9UHC9 1359 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 PI4K2BG5E9Z4 385 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 ADH1BP00325 375 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 GRK6P43250 576 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 CEBPZQ03701 1054 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 TRDNQ13061 729 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 TMEM201Q5SNT2 666 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 CPLX2Q6PUV4 134 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 SASS6Q6UVJ0 657 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 CWC27Q6UX04 472 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 CYP26C1Q6V0L0 522 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 KSR2Q6VAB6 950 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 CYP2U1Q7Z449 544 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 TBC1D1Q86TI0 1168 aaPredicted RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 CPXCR1Q8N123 301 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 CARD14Q9BXL6 1004 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 ANKRD6Q9Y2G4 727 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 SPATA31C2B4DYI2 1134 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 TRAF5O00463 557 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 HSD3B1P14060 373 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 ID4P47928 161 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 MCM2P49736 904 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 AKAP17AQ02040 695 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 RING1Q06587 406 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 STK3Q13188 491 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 MOGSQ13724 837 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 LRRFIP1Q32MZ4 808 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 FAM209AQ5JX71 171 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 NFXL1Q6ZNB6 911 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 MAP4K3Q8IVH8 894 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 CCAR2Q8N163 923 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 DDX11Q96FC9 970 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 TTLL2Q9BWV7 592 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 UPF3BQ9BZI7 483 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 CNNM2Q9H8M5 875 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 PFDN2Q9UHV9 154 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 PUF60Q9UHX1 559 aaKnown RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 DLG5Q8TDM6 1919 aa3.34□□□□□ -1.87
HERC4-201ENST00000277817 COL11A1P12107 1806 aaPredicted RBP3.34□□□□□ -1.87
HERC4-201ENST00000277817 FAM177BA6PVY3 158 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 FYB1O15117 783 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 SNX2O60749 519 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 PSMA5P28066 241 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 GRIA4P48058 902 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 ZNF165P49910 485 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 TRIM29Q14134 588 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 YOD1Q5VVQ6 348 aaPredicted RBP3.34□□□□□ -1.88
HERC4-201ENST00000277817 USHBP1Q8N6Y0 703 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 GOLGA1Q92805 767 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 PMEPA1Q969W9 287 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 VWCEQ96DN2 955 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 SDF4Q9BRK5 362 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 NOL7Q9UMY1 257 aaKnown RBP3.34□□□□□ -1.88
HERC4-201ENST00000277817 TACC3Q9Y6A5 838 aa3.34□□□□□ -1.88
HERC4-201ENST00000277817 PLEKHH1Q9ULM0 1364 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 BTBD11A6QL63 1104 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 K7ENM7 598 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 WNT7AO00755 349 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 USP2O75604 605 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 MBD3O95983 291 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 ASLP04424 464 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 RRM1P23921 792 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 CYP2C19P33261 490 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 ZBED6P86452 979 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 SEMA5AQ13591 1074 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 SEZ6Q53EL9 994 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 FGD2Q7Z6J4 655 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 LRRC47Q8N1G4 583 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 SLC35G2Q8TBE7 412 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 DDX54Q8TDD1 881 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 SLX1AQ9BQ83 275 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 ANTXR1Q9H6X2 564 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 ZBTB21Q9ULJ3 1066 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 CYP46A1Q9Y6A2 500 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 GNAT3A8MTJ3 354 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 NCAM2O15394 837 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 ITGBL1O95965 494 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 AKAP5P24588 427 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 L1CAMP32004 1257 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 RGS19P49795 217 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 PPP2R5EQ16537 467 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 TPD52L1Q16890 204 aaPredicted RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 ATAT1Q5SQI0 421 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 IQCEQ6IPM2 695 aa3.33□□□□□ -1.88
HERC4-201ENST00000277817 RALYLQ86SE5 291 aaKnown RBP3.33□□□□□ -1.88
HERC4-201ENST00000277817 AACSQ86V21 672 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms