RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 PPP1R3GB7ZBB8 358 aa18.36■□□□□ 0.53
TPM1-201ENST00000267996 TRAF5O00463 557 aa18.36■□□□□ 0.53
TPM1-201ENST00000267996 ITGB5P18084 799 aa18.36■□□□□ 0.53
TPM1-201ENST00000267996 BAATQ14032 418 aaPredicted RBP18.36■□□□□ 0.53
TPM1-201ENST00000267996 SV2BQ7L1I2 683 aa18.36■□□□□ 0.53
TPM1-201ENST00000267996 KCNK18Q7Z418 384 aa18.36■□□□□ 0.53
TPM1-201ENST00000267996 ENOX1Q8TC92 643 aaKnown RBP18.36■□□□□ 0.53
TPM1-201ENST00000267996 LARP4BQ92615 738 aaKnown RBP18.36■□□□□ 0.53
TPM1-201ENST00000267996 AGTPBP1Q9UPW5 1226 aa18.36■□□□□ 0.53
TPM1-201ENST00000267996 ARP10275 920 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 CD44P16070 742 aaKnown RBP18.35■□□□□ 0.53
TPM1-201ENST00000267996 GJA5P36382 358 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 ZNF75DP51815 510 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 MRPS9P82933 396 aaKnown RBP18.35■□□□□ 0.53
TPM1-201ENST00000267996 PLCB2Q00722 1185 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 FMR1Q06787 632 aaKnown RBP eCLIP18.35■□□□□ 0.53
TPM1-201ENST00000267996 PPP2R5CQ13362 524 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 ZNF658Q5TYW1 1059 aaPredicted RBP18.35■□□□□ 0.53
TPM1-201ENST00000267996 HAUS3Q68CZ6 603 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 XRRA1Q6P2D8 792 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 B3GNT9Q6UX72 402 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 NSMFQ6X4W1 530 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 OTOP1Q7RTM1 612 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 MED15Q96RN5 788 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 ACAD9Q9H845 621 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 RRAGCQ9HB90 399 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 PXMP2Q9NR77 195 aa18.35■□□□□ 0.53
TPM1-201ENST00000267996 MED24O75448 989 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 RHOBTB3O94955 611 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 SPATA31C1P0DKV0 1188 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 RPA1P27694 616 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 FKBP1BP68106 108 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 MCM6Q14566 821 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 PGM5Q15124 567 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 HS1BP3Q53T59 392 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 FASTKD5Q7L8L6 764 aaKnown RBP18.34■□□□□ 0.53
TPM1-201ENST00000267996 KCTD17Q8N5Z5 321 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 CHST13Q8NET6 341 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 ERMNQ8TAM6 284 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 RMDN3Q96TC7 470 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 PDCD2LQ9BRP1 358 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 JADE2Q9NQC1 790 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 MYMKA6NI61 221 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 TPM4P67936 248 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 KMT5BQ4FZB7 885 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 LRCH2Q5VUJ6 765 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 NCAPH2Q6IBW4 605 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 RIOX2Q8IUF8 465 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 SLC10A4Q96EP9 437 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 RIT2Q99578 217 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 POLR3CQ9BUI4 534 aaPredicted RBP18.34■□□□□ 0.53
TPM1-201ENST00000267996 LRRC27Q9C0I9 530 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 ASCC2Q9H1I8 757 aaPredicted RBP18.34■□□□□ 0.53
TPM1-201ENST00000267996 CYP39A1Q9NYL5 469 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 BTBD7Q9P203 1132 aa18.34■□□□□ 0.53
TPM1-201ENST00000267996 POTEB3A0JP26 581 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 EML1O00423 815 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 IRX3P78415 501 aaPredicted RBP18.33■□□□□ 0.52
TPM1-201ENST00000267996 GPAT2Q6NUI2 795 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 POTEBQ6S5H4 581 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 CATSPER3Q86XQ3 398 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 ZNF577Q9BSK1 485 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 GTPBP4Q9BZE4 634 aaKnown RBP18.33■□□□□ 0.52
TPM1-201ENST00000267996 WDR11Q9BZH6 1224 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 TRIM5Q9C035 493 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 A1CFQ9NQ94 594 aaKnown RBP18.33■□□□□ 0.52
TPM1-201ENST00000267996 KIAA1024Q9UPX6 916 aa18.33■□□□□ 0.52
TPM1-201ENST00000267996 IPO5O00410 1097 aaKnown RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 EIF2AK2P19525 551 aaKnown RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 CDC25BP30305 580 aa18.32■□□□□ 0.52
TPM1-201ENST00000267996 HERVK_113P62684 666 aa18.32■□□□□ 0.52
TPM1-201ENST00000267996 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 SMYD4Q8IYR2 804 aaPredicted RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 GIMAP8Q8ND71 665 aaPredicted RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 MRFAP1L1Q96HT8 127 aa18.32■□□□□ 0.52
TPM1-201ENST00000267996 ZFP91Q96JP5 570 aaPredicted RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 PURBQ96QR8 312 aaKnown RBP18.32■□□□□ 0.52
TPM1-201ENST00000267996 KCNH7Q9NS40 1196 aa18.32■□□□□ 0.52
TPM1-201ENST00000267996 PVALEFA0A1B0GWK0 134 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 GAS7O60861 476 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 CNMDO75829 334 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 PABPC4Q13310 644 aaKnown RBP eCLIP18.31■□□□□ 0.521e-6■□□□□ 11.2
TPM1-201ENST00000267996 SNAPC2Q13487 334 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 PLS1Q14651 629 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 ARHGEF16Q5VV41 709 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 VSIG10LQ86VR7 867 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 TRIM44Q96DX7 344 aaPredicted RBP18.31■□□□□ 0.52
TPM1-201ENST00000267996 HSD17B14Q9BPX1 270 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 EIF2AK1Q9BQI3 630 aaKnown RBP18.31■□□□□ 0.52
TPM1-201ENST00000267996 AGO4Q9HCK5 861 aaKnown RBP18.31■□□□□ 0.52
TPM1-201ENST00000267996 FBXO40Q9UH90 709 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 DHX15O43143 795 aaKnown RBP18.31■□□□□ 0.52
TPM1-201ENST00000267996 ZNF18P17022 549 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 ASIC1P78348 528 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 UNC13DQ70J99 1090 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.31■□□□□ 0.52
TPM1-201ENST00000267996 NSUN6Q8TEA1 469 aaKnown RBP18.31■□□□□ 0.52
TPM1-201ENST00000267996 CCDC47Q96A33 483 aaKnown RBP18.31■□□□□ 0.52
TPM1-201ENST00000267996 TEKT3Q9BXF9 490 aa18.31■□□□□ 0.52
TPM1-201ENST00000267996 SPATC1LQ9H0A9 340 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms