RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DSG3P32926 999 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 Q4G0T1 1027 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 CEP55Q53EZ4 464 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 RNF207Q6ZRF8 634 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 USP50Q70EL3 339 aaPredicted RBP18.49■□□□□ 0.55
USP4-201ENST00000265560 TRIML1Q8N9V2 468 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 GLIS3Q8NEA6 775 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 ZNF214Q9UL59 606 aaPredicted RBP18.49■□□□□ 0.55
USP4-201ENST00000265560 IREB2P48200 963 aaKnown RBP18.48■□□□□ 0.55
USP4-201ENST00000265560 PMS1P54277 932 aaKnown RBP18.48■□□□□ 0.55
USP4-201ENST00000265560 CTTNQ14247 550 aaKnown RBP18.48■□□□□ 0.55
USP4-201ENST00000265560 BCAS3Q9H6U6 928 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 SPDYE16A6NNV3 312 aaPredicted RBP18.48■□□□□ 0.55
USP4-201ENST00000265560 HSD17B4P51659 736 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 TRAF1Q13077 416 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 PABPC4Q13310 644 aaKnown RBP eCLIP18.48■□□□□ 0.55
USP4-201ENST00000265560 LRCH2Q5VUJ6 765 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 SLFN12Q8IYM2 578 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 PIGOQ8TEQ8 1089 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 RAD54LQ92698 747 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 RMDN3Q96TC7 470 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 PAGR1Q9BTK6 254 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 KCNF1Q9H3M0 494 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 ZHX3Q9H4I2 956 aa18.48■□□□□ 0.55
USP4-201ENST00000265560 CIITAP33076 1130 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 TPM4P67936 248 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 LRRC41Q15345 812 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 ZSCAN30Q86W11 494 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 SYNRGQ9UMZ2 1314 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 RLFQ13129 1914 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 UBASH3AP57075 661 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 MRPS9P82933 396 aaKnown RBP18.47■□□□□ 0.55
USP4-201ENST00000265560 GOLGA8FQ08AF8 430 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 GOLGA8DPQ0D2H9 430 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 ZNF658Q5TYW1 1059 aaPredicted RBP18.47■□□□□ 0.55
USP4-201ENST00000265560 SARM1Q6SZW1 724 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 DDX12PQ92771 950 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 ZNF577Q9BSK1 485 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 CYP3A4P08684 503 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 ERCC3P19447 782 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 MSNP26038 577 aaKnown RBP18.47■□□□□ 0.55
USP4-201ENST00000265560 NF2P35240 595 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 NOL9Q5SY16 702 aaKnown RBP18.47■□□□□ 0.55
USP4-201ENST00000265560 NELFBQ8WX92 580 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 VAV3Q9UKW4 847 aa18.47■□□□□ 0.55
USP4-201ENST00000265560 SPATA31C1P0DKV0 1188 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 TPD52L1Q16890 204 aaPredicted RBP18.46■□□□□ 0.55
USP4-201ENST00000265560 TPH2Q8IWU9 490 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 REPS2Q8NFH8 660 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 NAP1L4Q99733 375 aaKnown RBP18.46■□□□□ 0.55
USP4-201ENST00000265560 DACH1Q9UI36 760 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 TMC6Q7Z403 805 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 ENOX1Q8TC92 643 aaKnown RBP18.46■□□□□ 0.55
USP4-201ENST00000265560 SH2D3AQ9BRG2 576 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 RRAGCQ9HB90 399 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 KCNH7Q9NS40 1196 aa18.46■□□□□ 0.55
USP4-201ENST00000265560 TESPA1A2RU30 521 aaPredicted RBP18.45■□□□□ 0.54
USP4-201ENST00000265560 GAS7O60861 476 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 ECM2O94769 699 aaPredicted RBP18.45■□□□□ 0.54
USP4-201ENST00000265560 TMEM119Q4V9L6 283 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 MOXD1Q6UVY6 613 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 OPTNQ96CV9 577 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 EXOC1Q9NV70 894 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 OTOFQ9HC10 1997 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 IPO5O00410 1097 aaKnown RBP18.45■□□□□ 0.54
USP4-201ENST00000265560 GRIN3BO60391 1043 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 MCF2L2Q86YR7 1114 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 ANKRD13AQ8IZ07 590 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 C12orf42Q96LP6 360 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 ZKSCAN5Q9Y2L8 839 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 PLA2G4BP0C869 781 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 OTOP1Q7RTM1 612 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 EIF2AK1Q9BQI3 630 aaKnown RBP18.45■□□□□ 0.54
USP4-201ENST00000265560 BTBD7Q9P203 1132 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 PARP14Q460N5 1801 aa18.45■□□□□ 0.54
USP4-201ENST00000265560 ARHGEF16Q5VV41 709 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 MCTP2Q6DN12 878 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 DYDC2Q96IM9 177 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 FAM20AQ96MK3 541 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 C7orf25Q9BPX7 421 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 PYCARDQ9ULZ3 195 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 SP4Q02446 784 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 FSTL1Q12841 308 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 PAK1Q13153 545 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 CACTINQ8WUQ7 758 aaKnown RBP18.44■□□□□ 0.54
USP4-201ENST00000265560 MRFAP1L1Q96HT8 127 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 MXRA8Q9BRK3 442 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 FGFBP2Q9BYJ0 223 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 INTS13Q9NVM9 706 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 RMND1Q9NWS8 449 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 HOXC10Q9NYD6 342 aa18.44■□□□□ 0.54
USP4-201ENST00000265560 ATP9AO75110 1047 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 PSMD10O75832 226 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 AMPD3Q01432 767 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 GPBP1Q86WP2 473 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 KIAA0895Q8NCT3 520 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 BANK1Q8NDB2 785 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 UNC45AQ9H3U1 944 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 WRAP73Q9P2S5 460 aaPredicted RBP18.43■□□□□ 0.54
USP4-201ENST00000265560 STK17AQ9UEE5 414 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms