RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 FAM133AQ8N9E0 248 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 CCDC47Q96A33 483 aaKnown RBP18.29■□□□□ 0.52
ZNF541-201ENST00000263351 CCDC43Q96MW1 224 aaKnown RBP18.29■□□□□ 0.52
ZNF541-201ENST00000263351 KRT12Q99456 494 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 ADAMTS1Q9UHI8 967 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 HYOU1Q9Y4L1 999 aa18.29■□□□□ 0.52
ZNF541-201ENST00000263351 A0A087X0T9 212 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 ZEB2O60315 1214 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 FAM228BP0C875 321 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 KLHL7Q8IXQ5 586 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 MICALL1Q8N3F8 863 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 FNBP4Q8N3X1 1017 aaPredicted RBP18.28■□□□□ 0.52
ZNF541-201ENST00000263351 CAPS2Q9BXY5 557 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 DDX60LQ5H9U9 1706 aaKnown RBP18.28■□□□□ 0.52
ZNF541-201ENST00000263351 TUBBP07437 444 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 MAGEA9P43362 315 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 GUCY1A3Q02108 690 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 RAPGEF1Q13905 1077 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 SLC10A5Q5PT55 438 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 DDX42Q86XP3 938 aaKnown RBP eCLIP18.28■□□□□ 0.52
ZNF541-201ENST00000263351 OR2W6PQ8NHA6 318 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 RAD54LQ92698 747 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 AK8Q96MA6 479 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 MXD3Q9BW11 206 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 SPZ1Q9BXG8 430 aa18.28■□□□□ 0.52
ZNF541-201ENST00000263351 LAD1O00515 517 aa18.27■□□□□ 0.52
ZNF541-201ENST00000263351 MYL1P05976 194 aa18.27■□□□□ 0.52
ZNF541-201ENST00000263351 HNRNPH3P31942 346 aaKnown RBP18.27■□□□□ 0.52
ZNF541-201ENST00000263351 COASYQ13057 564 aa18.27■□□□□ 0.52
ZNF541-201ENST00000263351 CCDC40Q4G0X9 1142 aa18.27■□□□□ 0.52
ZNF541-201ENST00000263351 HAS1Q92839 578 aa18.27■□□□□ 0.52
ZNF541-201ENST00000263351 ZNF233A6NK53 670 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 BACH1O14867 736 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 HEXIM1O94992 359 aaKnown RBP18.27■□□□□ 0.51
ZNF541-201ENST00000263351 PDHBP11177 359 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 SNAP25P60880 206 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 FIGNQ5HY92 759 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 FAM83BQ5T0W9 1011 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 FBXW10Q5XX13 1052 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 RPGRIP1Q96KN7 1286 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 LRRC4CQ9HCJ2 640 aa18.27■□□□□ 0.51
ZNF541-201ENST00000263351 RREB1Q92766 1687 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 SHOX2O60902 331 aaPredicted RBP18.26■□□□□ 0.51
ZNF541-201ENST00000263351 AKR1B1P15121 316 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 CASP5P51878 434 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 DNAJC19Q96DA6 116 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 ANKRD2Q9GZV1 360 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 TSPYL1Q9H0U9 437 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 COL14A1Q05707 1796 aaKnown RBP18.26■□□□□ 0.51
ZNF541-201ENST00000263351 TNRC6CQ9HCJ0 1690 aaKnown RBP18.26■□□□□ 0.51
ZNF541-201ENST00000263351 POTEB3A0JP26 581 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 POTECB2RU33 542 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 GNA11P29992 359 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 GPSM2P81274 684 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 CDK17Q00537 523 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 AMPD3Q01432 767 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 TTC31Q49AM3 519 aaPredicted RBP18.26■□□□□ 0.51
ZNF541-201ENST00000263351 POTEBQ6S5H4 581 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 KCTD1Q719H9 257 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 CASKIN2Q8WXE0 1202 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 TSGA10Q9BZW7 698 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 FAM107BQ9H098 131 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 CUEDC2Q9H467 287 aa18.26■□□□□ 0.51
ZNF541-201ENST00000263351 FAM196BA6NMK8 535 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L15C9J2P7 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L13C9JLJ4 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L11C9JVI0 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L18D6R9N7 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L22D6RA61 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L17D6RBQ6 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L19D6RCP7 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L20D6RJB6 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 SEC24CP53992 1094 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L24Q0WX57 530 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 USP17L6PQ6QN14 398 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 PIK3R5Q8WYR1 880 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 ARHGEF1Q92888 912 aaKnown RBP18.25■□□□□ 0.51
ZNF541-201ENST00000263351 ALS2CR12Q96Q35 445 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 FAM169AQ9Y6X4 670 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 MEIS1O00470 390 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 MCM3P25205 808 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 CHADLQ6NUI6 762 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 C16orf86Q6ZW13 317 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 AMOTL1Q8IY63 956 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 GUF1Q8N442 669 aaKnown RBP18.25■□□□□ 0.51
ZNF541-201ENST00000263351 RNPC3Q96LT9 517 aaKnown RBP18.25■□□□□ 0.51
ZNF541-201ENST00000263351 CENPHQ9H3R5 247 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 ROBO3Q96MS0 1386 aa18.25■□□□□ 0.51
ZNF541-201ENST00000263351 SBF2Q86WG5 1849 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 NAV1Q8NEY1 1877 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 LCA5LO95447 670 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 BAG3O95817 575 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 NNTQ13423 1086 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 GALNT17Q6IS24 598 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 DPP8Q6V1X1 898 aaPredicted RBP18.24■□□□□ 0.51
ZNF541-201ENST00000263351 NEDD1Q8NHV4 660 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 SH3GL2Q99962 352 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 AP1M1Q9BXS5 423 aa18.24■□□□□ 0.51
ZNF541-201ENST00000263351 AJAP1Q9UKB5 411 aaPredicted RBP18.24■□□□□ 0.51
ZNF541-201ENST00000263351 KIAA1024Q9UPX6 916 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms