RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 COBLL1Q53SF7 1204 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 GALNT17Q6IS24 598 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 UNC13DQ70J99 1090 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 CCDC84Q86UT8 332 aaPredicted RBP13.7□□□□□ -0.22
NUP88-201ENST00000225696 DZIP1Q86YF9 867 aaKnown RBP13.7□□□□□ -0.22
NUP88-201ENST00000225696 MTMR9Q96QG7 549 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 TBC1D7Q9P0N9 293 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 INPP5BP32019 993 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 LSP1P33241 339 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 GNAQP50148 359 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 RPS8P62241 208 aaKnown RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 AMPD3Q01432 767 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 EHHADHQ08426 723 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 CFAP221Q4G0U5 840 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 KRT25Q7Z3Z0 450 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 MAPKAPK5Q8IW41 473 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 LARP4BQ92615 738 aaKnown RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 DDX12PQ92771 950 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 CALML4Q96GE6 196 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 LAMB2P55268 1798 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 COL14A1Q05707 1796 aaKnown RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 A0A087X0T9 212 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 FAM228BP0C875 321 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 POLR2FP61218 127 aaKnown RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 FAM83BQ5T0W9 1011 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 CFAP58Q5T655 872 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 SUGP1Q8IWZ8 645 aaKnown RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 ZNF444Q8N0Y2 327 aaPredicted RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 GUF1Q8N442 669 aaKnown RBP13.69□□□□□ -0.22
NUP88-201ENST00000225696 TBC1D5Q92609 795 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 RUBCNQ92622 972 aa13.69□□□□□ -0.22
NUP88-201ENST00000225696 RBAK-RBAKDNI3L0D1 243 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 RAD51CO43502 376 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 KCNQ2O43526 872 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 FNTAP49354 379 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 TBC1D9BQ66K14 1250 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 IFT20Q8IY31 132 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 OR2W6PQ8NHA6 318 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 COA7Q96BR5 231 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 GPR101Q96P66 508 aaPredicted RBP13.68□□□□□ -0.22
NUP88-201ENST00000225696 INPP4AQ96PE3 977 aaPredicted RBP13.68□□□□□ -0.22
NUP88-201ENST00000225696 ADAMTS1Q9UHI8 967 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 CAPN7Q9Y6W3 813 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 CACNB1Q02641 598 aaPredicted RBP13.68□□□□□ -0.22
NUP88-201ENST00000225696 NAB2Q15742 525 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 CALCRLQ16602 461 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 NAA35Q5VZE5 725 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 KLHL7Q8IXQ5 586 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 C6orf50Q9HD87 102 aa13.68□□□□□ -0.22
NUP88-201ENST00000225696 PVALEFA0A1B0GWK0 134 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 SSU72P8A0A1W2PR75 194 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 USP17L5A8MUK1 530 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 ZCWPW2Q504Y3 356 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 MEI1Q5TIA1 1274 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 KDM7AQ6ZMT4 941 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 DDX42Q86XP3 938 aaKnown RBP eCLIP13.67□□□□□ -0.22
NUP88-201ENST00000225696 REXO1Q8N1G1 1221 aaKnown RBP13.67□□□□□ -0.22
NUP88-201ENST00000225696 RNF10Q8N5U6 811 aaKnown RBP13.67□□□□□ -0.22
NUP88-201ENST00000225696 MARCH10Q8NA82 808 aaPredicted RBP13.67□□□□□ -0.22
NUP88-201ENST00000225696 RAD54LQ92698 747 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.67□□□□□ -0.22
NUP88-201ENST00000225696 LSM14BQ9BX40 385 aaKnown RBP13.67□□□□□ -0.22
NUP88-201ENST00000225696 SPZ1Q9BXG8 430 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 FAM107BQ9H098 131 aa13.67□□□□□ -0.22
NUP88-201ENST00000225696 NPHP3-ACAD11A0A0J9YXS1 232 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 GRID2IPA4D2P6 1211 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 TRAF5O00463 557 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 NR1D1P20393 614 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 ECHS1P30084 290 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 PPP1R2P41236 205 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 IRX3P78415 501 aaPredicted RBP13.66□□□□□ -0.22
NUP88-201ENST00000225696 HDLBPQ00341 1268 aaKnown RBP13.66□□□□□ -0.22
NUP88-201ENST00000225696 LRRC63Q05C16 580 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 KIAA0753Q2KHM9 967 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 GLE1Q53GS7 698 aaKnown RBP13.66□□□□□ -0.22
NUP88-201ENST00000225696 SFMBT2Q5VUG0 894 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 MCTP2Q6DN12 878 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 NELFCDQ8IXH7 590 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 FAM133AQ8N9E0 248 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 SNX29Q8TEQ0 813 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 DNAJC19Q96DA6 116 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 IQCDQ96DY2 449 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 LRRC4CQ9HCJ2 640 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 FRMPD2Q68DX3 1309 aaPredicted RBP13.66□□□□□ -0.22
NUP88-201ENST00000225696 IRS2Q9Y4H2 1338 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 HPDP32754 393 aaPredicted RBP13.66□□□□□ -0.22
NUP88-201ENST00000225696 ERVK-9P63128 1117 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 CDC37Q16543 378 aaPredicted RBP13.66□□□□□ -0.22
NUP88-201ENST00000225696 PTGISQ16647 500 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 SLC9C1Q4G0N8 1177 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 CEP95Q96GE4 821 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 EPN3Q9H201 632 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 PLAAQ9Y263 795 aa13.66□□□□□ -0.22
NUP88-201ENST00000225696 UBAP1LF5GYI3 381 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 BACH1O14867 736 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 MEFVO15553 781 aaPredicted RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 SERPING1P05155 500 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ACTN1P12814 892 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 GNA11P29992 359 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 COASYQ13057 564 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms