RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 BCL6P41182 706 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 GNL2Q13823 731 aaKnown RBP6.9□□□□□ -1.3
CD44-239ENST00000639002 SKOR2Q2VWA4 1001 aaPredicted RBP6.9□□□□□ -1.3
CD44-239ENST00000639002 CEP68Q76N32 757 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 FAM26EQ8N5C1 309 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 TMEM145Q8NBT3 493 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 HNRNPLLQ8WVV9 542 aaKnown RBP6.9□□□□□ -1.3
CD44-239ENST00000639002 DIO2Q92813 273 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 DDX11Q96FC9 970 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 GMLQ99445 158 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 KRTAP4-11Q9BYQ6 195 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 LRP2BPQ9P2M1 347 aa6.9□□□□□ -1.3
CD44-239ENST00000639002 PRICKLE3O43900 615 aaPredicted RBP6.89□□□□□ -1.31
CD44-239ENST00000639002 RPL11P62913 178 aaKnown RBP6.89□□□□□ -1.31
CD44-239ENST00000639002 SLC10A6Q3KNW5 377 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 SLC35F1Q5T1Q4 408 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 ACBD5Q5T8D3 534 aaPredicted RBP6.89□□□□□ -1.31
CD44-239ENST00000639002 FRMD5Q7Z6J6 570 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 MIB1Q86YT6 1006 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 DCP2Q8IU60 420 aaKnown RBP6.89□□□□□ -1.31
CD44-239ENST00000639002 RIOX2Q8IUF8 465 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 LINC00482Q8N8I6 264 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 SLC43A3Q8NBI5 491 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 GORASP1Q9BQQ3 440 aa6.89□□□□□ -1.31
CD44-239ENST00000639002 MEFVO15553 781 aaPredicted RBP6.88□□□□□ -1.31
CD44-239ENST00000639002 KLF4O43474 513 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 CPP00450 1065 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 SYN1P17600 705 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 DNAJA1P31689 397 aaKnown RBP6.88□□□□□ -1.31
CD44-239ENST00000639002 CARFQ8N187 725 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 CCDC140Q96MF4 163 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 TEPSINQ96N21 525 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 ST7Q9NRC1 585 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 PALD1Q9ULE6 856 aa6.88□□□□□ -1.31
CD44-239ENST00000639002 A0A1W2PQU0 124 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 SLC6A11P48066 632 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 KRTAP10-2P60368 255 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 KCNAB2Q13303 367 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 SMAD4Q13485 552 aaKnown RBP6.87□□□□□ -1.31
CD44-239ENST00000639002 NT5DC1Q5TFE4 455 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 MROH9Q5TGP6 573 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 PPIL6Q8IXY8 311 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 SEC14L1Q92503 715 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 ZBTB8AQ96BR9 441 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 NPFFR2Q9Y5X5 522 aa6.87□□□□□ -1.31
CD44-239ENST00000639002 NOBOXO60393 691 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 LTBRP36941 435 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 KCNJ6P48051 423 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 PPP2R2AP63151 447 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 ETV3LQ6ZN32 361 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 ANKS3Q6ZW76 656 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 EEPD1Q7L9B9 569 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 MILR1Q7Z6M3 343 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 TRMT2BQ96GJ1 504 aaKnown RBP6.86□□□□□ -1.31
CD44-239ENST00000639002 C11orf84Q9BUA3 381 aaPredicted RBP6.86□□□□□ -1.31
CD44-239ENST00000639002 AP5M1Q9H0R1 490 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 CDIP1Q9H305 208 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 DUSP10Q9Y6W6 482 aa6.86□□□□□ -1.31
CD44-239ENST00000639002 CYP2C8P10632 490 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 RBM25P49756 843 aaKnown RBP6.85□□□□□ -1.31
CD44-239ENST00000639002 GTF2A2P52657 109 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 RTP5Q14D33 572 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 DDR2Q16832 855 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 CR1LQ2VPA4 569 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 ZFYVE27Q5T4F4 411 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 STK32CQ86UX6 486 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 TMEM169Q96HH4 297 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 EPN3Q9H201 632 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 PCDHA2Q9Y5H9 948 aa6.85□□□□□ -1.31
CD44-239ENST00000639002 H7BY64 318 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 DLX3O60479 287 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 MSCO60682 206 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 TADA3O75528 432 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 SARSP49591 514 aaKnown RBP6.84□□□□□ -1.31
CD44-239ENST00000639002 LSAMPQ13449 338 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 CD300LDQ6UXZ3 194 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 ZNF761Q86XN6 746 aaPredicted RBP6.84□□□□□ -1.31
CD44-239ENST00000639002 FAM126BQ8IXS8 530 aa6.84□□□□□ -1.31
CD44-239ENST00000639002 THBS2P35442 1172 aa6.83□□□□□ -1.32
CD44-239ENST00000639002 STAT5AP42229 794 aa6.83□□□□□ -1.32
CD44-239ENST00000639002 ITGA1P56199 1179 aa6.83□□□□□ -1.32
CD44-239ENST00000639002 RBM10P98175 930 aaKnown RBP6.83□□□□□ -1.32
CD44-239ENST00000639002 PRR31Q5SQ13 230 aa6.83□□□□□ -1.32
CD44-239ENST00000639002 FERMT3Q86UX7 667 aa6.83□□□□□ -1.32
CD44-239ENST00000639002 ARRDC4Q8NCT1 418 aa6.83□□□□□ -1.32
CD44-239ENST00000639002 MYO1BO43795 1136 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 CELA3BP08861 270 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 MAP4K2Q12851 820 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 KYQ8NBH2 561 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 ADAMTS17Q8TE56 1095 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.82□□□□□ -1.32
CD44-239ENST00000639002 IER2Q9BTL4 223 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 LNPKQ9C0E8 428 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 NTMQ9P121 344 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 WASF3Q9UPY6 502 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 ZNF652Q9Y2D9 606 aa6.82□□□□□ -1.32
CD44-239ENST00000639002 TCRBV5S2A0A599 114 aa6.81□□□□□ -1.32
CD44-239ENST00000639002 HGSO14964 777 aaPredicted RBP6.81□□□□□ -1.32
CD44-239ENST00000639002 RPL13P26373 211 aaKnown RBP6.81□□□□□ -1.32
CD44-239ENST00000639002 NFKB2Q00653 900 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms