RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 KARSQ15046 597 aaKnown RBP20.62■□□□□ 0.89
CLN3-263ENST00000637871 CDKAL1Q5VV42 579 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 JAKMIP3Q5VZ66 844 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 SPECC1LQ69YQ0 1117 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 RASGRP2Q7LDG7 609 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 FEZ1Q99689 392 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 GINM1Q9NU53 330 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 LRRC10BA6NIK2 292 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 RHOBTB3O94955 611 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 HMGCS2P54868 508 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 PAK1Q13153 545 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 NR1I3Q14994 352 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 CALCRLQ16602 461 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 KIAA1755Q5JYT7 1200 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 ARMCX5Q6P1M9 558 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 MOXD1Q6UVY6 613 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 C17orf53Q8N3J3 647 aaPredicted RBP20.61■□□□□ 0.89
CLN3-263ENST00000637871 NOC3LQ8WTT2 800 aaKnown RBP20.61■□□□□ 0.89
CLN3-263ENST00000637871 COA7Q96BR5 231 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 PSTPIP2Q9H939 334 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 AS3MTQ9HBK9 375 aa20.61■□□□□ 0.89
CLN3-263ENST00000637871 RAD21O60216 631 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 ZBTB48P10074 688 aaPredicted RBP20.6■□□□□ 0.89
CLN3-263ENST00000637871 USP11P51784 963 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 TBX2Q13207 712 aaPredicted RBP20.6■□□□□ 0.89
CLN3-263ENST00000637871 AP3B2Q13367 1082 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 NAALADL2Q58DX5 795 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 CCDC102AQ96A19 550 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 MTRQ99707 1265 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 C7orf25Q9BPX7 421 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 WDR18Q9BV38 432 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 TMX1Q9H3N1 280 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 LOC285556D6RIA3 1793 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 UQCRHLA0A096LP55 91 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 UQCRHP07919 91 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 COBLL1Q53SF7 1204 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 BTNL9Q6UXG8 535 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 CCAR2Q8N163 923 aaKnown RBP20.6■□□□□ 0.89
CLN3-263ENST00000637871 ARHGEF10LQ9HCE6 1279 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 KCNH4Q9UQ05 1017 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 STK24Q9Y6E0 443 aa20.6■□□□□ 0.89
CLN3-263ENST00000637871 USP17L10C9JJH3 530 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 FOSP01100 380 aaPredicted RBP20.59■□□□□ 0.89
CLN3-263ENST00000637871 TNNT1P13805 278 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 CD44P16070 742 aaKnown RBP20.59■□□□□ 0.89
CLN3-263ENST00000637871 BACE1P56817 501 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 PTPN14Q15678 1187 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 SPICE1Q8N0Z3 855 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 DHTKD1Q96HY7 919 aaPredicted RBP20.59■□□□□ 0.89
CLN3-263ENST00000637871 MS4A4AQ96JQ5 239 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 MED15Q96RN5 788 aa20.59■□□□□ 0.89
CLN3-263ENST00000637871 A0A0G2JLL6 359 aaPredicted RBP20.58■□□□□ 0.89
CLN3-263ENST00000637871 F5H6K3 240 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 KLRC3Q07444 240 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 SNAPC2Q13487 334 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 ARID5BQ14865 1188 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 TTBK2Q6IQ55 1244 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 GADL1Q6ZQY3 521 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 PRRT2Q7Z6L0 340 aaPredicted RBP20.58■□□□□ 0.89
CLN3-263ENST00000637871 BRI3BPQ8WY22 251 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 BLZF1Q9H2G9 400 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 SAMSN1Q9NSI8 373 aaKnown RBP20.58■□□□□ 0.89
CLN3-263ENST00000637871 EMILIN3Q9NT22 766 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 LRWD1Q9UFC0 647 aa20.58■□□□□ 0.89
CLN3-263ENST00000637871 LIMA1Q9UHB6 759 aaKnown RBP20.58■□□□□ 0.89
CLN3-263ENST00000637871 THSD7BQ9C0I4 1608 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 CCL15-CCL14A0A0B4J2E2 113 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 PSMA7O14818 248 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 STX10O60499 249 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 MOGSQ13724 837 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 CCL15Q16663 113 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 KLHL10Q6JEL2 608 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 CNNM4Q6P4Q7 775 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 KCTD1Q719H9 257 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 TRMT44Q8IYL2 757 aaKnown RBP20.57■□□□□ 0.88
CLN3-263ENST00000637871 ADSSL1Q8N142 457 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 AMNQ9BXJ7 453 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 TMX2Q9Y320 296 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 ITIH6Q6UXX5 1313 aa20.57■□□□□ 0.88
CLN3-263ENST00000637871 PVALEFA0A1B0GWK0 134 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 ARHGAP6O43182 974 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 TECP42680 631 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 QRICH1Q2TAL8 776 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 TREML2Q5T2D2 321 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 KRT79Q5XKE5 535 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 NYAP1Q6ZVC0 841 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 SV2BQ7L1I2 683 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 GIMAP8Q8ND71 665 aaPredicted RBP20.56■□□□□ 0.88
CLN3-263ENST00000637871 NUP88Q99567 741 aaPredicted RBP20.56■□□□□ 0.88
CLN3-263ENST00000637871 KIAA1683Q9H0B3 1180 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 TMEM260Q9NX78 707 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 ADD3Q9UEY8 706 aaKnown RBP20.56■□□□□ 0.88
CLN3-263ENST00000637871 CYP3A7-CYP3A51PA0A087WV96 503 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 BICDL2A1A5D9 508 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 GOLGA6L9A6NEM1 432 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 CXCL11O14625 94 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 PPP1R11O60927 126 aaPredicted RBP20.56■□□□□ 0.88
CLN3-263ENST00000637871 TPM1P09493 284 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 PLCG1P19174 1290 aa20.56■□□□□ 0.88
CLN3-263ENST00000637871 CYP3A7P24462 503 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms