RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SPDYE3A6NKU9 549 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 CABYRO75952 493 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 HOXA13P31271 388 aaPredicted RBP20.98■□□□□ 0.95
CLN3-259ENST00000637551 ADCY7P51828 1080 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 PKN1Q16512 942 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 CCSAPQ6IQ19 270 aaPredicted RBP20.98■□□□□ 0.95
CLN3-259ENST00000637551 GALNT17Q6IS24 598 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 TLK2Q86UE8 772 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 PIBF1Q8WXW3 757 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 EMID1Q96A84 441 aaPredicted RBP20.98■□□□□ 0.95
CLN3-259ENST00000637551 LRCH3Q96II8 777 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 KIF2CQ99661 725 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 WDR11Q9BZH6 1224 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 TPCN1Q9ULQ1 816 aa20.98■□□□□ 0.95
CLN3-259ENST00000637551 ZEB2O60315 1214 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 SMPD1P17405 629 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 EIF2AK2P19525 551 aaKnown RBP20.97■□□□□ 0.95
CLN3-259ENST00000637551 ADCYAP1R1P41586 468 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 SSRP1Q08945 709 aaKnown RBP20.97■□□□□ 0.95
CLN3-259ENST00000637551 SNX17Q15036 470 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 BRDTQ58F21 947 aaPredicted RBP20.97■□□□□ 0.95
CLN3-259ENST00000637551 CCDC62Q6P9F0 684 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 GPKOWQ92917 476 aaPredicted RBP eCLIP20.97■□□□□ 0.95
CLN3-259ENST00000637551 INPP4AQ96PE3 977 aaPredicted RBP20.97■□□□□ 0.95
CLN3-259ENST00000637551 AP5M1Q9H0R1 490 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 C6orf50Q9HD87 102 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 ALPK3Q96L96 1907 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 ELP1O95163 1332 aa20.97■□□□□ 0.95
CLN3-259ENST00000637551 MAFGO15525 162 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 ADCY6O43306 1168 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 KPNA6O60684 536 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 ICAM3P32942 547 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 CLK2P49760 499 aaKnown RBP20.96■□□□□ 0.95
CLN3-259ENST00000637551 CPT1AP50416 773 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 CCT2P78371 535 aaKnown RBP20.96■□□□□ 0.95
CLN3-259ENST00000637551 SCRN1Q12765 414 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 USP17L6PQ6QN14 398 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 WASF1Q92558 559 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 GTF3C6Q969F1 213 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 CDHR1Q96JP9 859 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 ZSCAN31Q96LW9 406 aaPredicted RBP20.96■□□□□ 0.95
CLN3-259ENST00000637551 TBC1D32Q96NH3 1257 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 NCOA5Q9HCD5 579 aaKnown RBP20.96■□□□□ 0.95
CLN3-259ENST00000637551 SH2B1Q9NRF2 756 aaPredicted RBP20.96■□□□□ 0.95
CLN3-259ENST00000637551 LIMCH1Q9UPQ0 1083 aa20.96■□□□□ 0.95
CLN3-259ENST00000637551 SMCO2A6NFE2 343 aa20.95■□□□□ 0.94
CLN3-259ENST00000637551 TYW1BQ6NUM6 668 aa20.95■□□□□ 0.94
CLN3-259ENST00000637551 FCHSD1Q86WN1 690 aa20.95■□□□□ 0.94
CLN3-259ENST00000637551 DIS3LQ8TF46 1054 aaKnown RBP20.95■□□□□ 0.94
CLN3-259ENST00000637551 SLC26A6Q9BXS9 759 aa20.95■□□□□ 0.94
CLN3-259ENST00000637551 hCG_1642624A0A1W2PR95 340 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 CTAGE5O15320 804 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 ST18O60284 1047 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 PGK1P00558 417 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 C6orf222P0C671 652 aaPredicted RBP20.94■□□□□ 0.94
CLN3-259ENST00000637551 XBP1P17861 261 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 FSCN1Q16658 493 aaKnown RBP20.94■□□□□ 0.94
CLN3-259ENST00000637551 EEPD1Q7L9B9 569 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 PHKBQ93100 1093 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 GPRASP2Q96D09 838 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 SENP7Q9BQF6 1050 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 BACH2Q9BYV9 841 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 PDGFCQ9NRA1 345 aa20.94■□□□□ 0.94
CLN3-259ENST00000637551 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 A6NJR5 290 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 GH1P01241 217 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 TXNP10599 105 aaKnown RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 MCM2P49736 904 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 ACLYP53396 1101 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 ME3Q16798 604 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 GJC2Q5T442 439 aaPredicted RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 NOL8Q76FK4 1167 aaKnown RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 REXO1Q8N1G1 1221 aaKnown RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 DAGLBQ8NCG7 672 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 GIMAP8Q8ND71 665 aaPredicted RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 LLPHQ9BRT6 129 aaKnown RBP20.93■□□□□ 0.94
CLN3-259ENST00000637551 POLR3EQ9NVU0 708 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 UNC80Q8N2C7 3258 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 SCN10AQ9Y5Y9 1956 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 MROH7Q68CQ1 1323 aa20.93■□□□□ 0.94
CLN3-259ENST00000637551 FIBPO43427 364 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 RGS20O76081 388 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 SREBF1P36956 1147 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 GNASQ5JWF2 1037 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 ANO1Q5XXA6 986 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 NLRX1Q86UT6 975 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 GLT1D1Q96MS3 346 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 DDX41Q9UJV9 622 aaKnown RBP20.92■□□□□ 0.94
CLN3-259ENST00000637551 PCDHA6Q9UN73 950 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 PCDHA8Q9Y5H6 950 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 MRVI1Q9Y6F6 885 aa20.92■□□□□ 0.94
CLN3-259ENST00000637551 A0A1W2PQ45 241 aaPredicted RBP20.91■□□□□ 0.94
CLN3-259ENST00000637551 A0A1W2PQY0 241 aa20.91■□□□□ 0.94
CLN3-259ENST00000637551 HOXD8P13378 290 aaPredicted RBP20.91■□□□□ 0.94
CLN3-259ENST00000637551 MRPS9P82933 396 aaKnown RBP20.91■□□□□ 0.94
CLN3-259ENST00000637551 LAMC2Q13753 1193 aa20.91■□□□□ 0.94
CLN3-259ENST00000637551 KCNA10Q16322 511 aa20.91■□□□□ 0.94
CLN3-259ENST00000637551 GPR153Q6NV75 609 aa20.91■□□□□ 0.94
CLN3-259ENST00000637551 NIPA1Q7RTP0 329 aa20.91■□□□□ 0.94
CLN3-259ENST00000637551 IL31RAQ8NI17 732 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 472.4 ms