RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MEIS1O00470 390 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 TFRCP02786 760 aaKnown RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 MYL1P05976 194 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 TPM1P09493 284 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 MTIF2P46199 727 aaKnown RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 HDLBPQ00341 1268 aaKnown RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 CCDC93Q567U6 631 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 CNGA4Q8IV77 575 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 RAD54LQ92698 747 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 SECISBP2LQ93073 1101 aaKnown RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 CCDC47Q96A33 483 aaKnown RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 CNOT6LQ96LI5 555 aaKnown RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 CARD6Q9BX69 1037 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 FGFBP2Q9BYJ0 223 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 RAB34Q9BZG1 259 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 ZSWIM4Q9H7M6 989 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 L2HGDHQ9H9P8 463 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 CHRM1P11229 460 aaPredicted RBP11.86□□□□□ -0.51
CUX1-221ENST00000622516 DPEP1P16444 411 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 CCNE1P24864 410 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 CASQ1P31415 396 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 UBXN2AP68543 259 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 DCAF4Q8WV16 495 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 DHTKD1Q96HY7 919 aaPredicted RBP11.86□□□□□ -0.51
CUX1-221ENST00000622516 MAP7D2Q96T17 732 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 ZHX3Q9H4I2 956 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 BMP3P12645 472 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 PDIA5Q14554 519 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 CNNM4Q6P4Q7 775 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 TTLL6Q8N841 843 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 ERO1AQ96HE7 468 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 AMNQ9BXJ7 453 aa11.86□□□□□ -0.51
CUX1-221ENST00000622516 SPDYE2BA6NHP3 402 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 LGALS16A8MUM7 142 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 ARHGAP4P98171 946 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 TBC1D8BQ0IIM8 1120 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 DLGAP5Q15398 846 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 SYCP1Q15431 976 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 PPP1R18Q6NYC8 613 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 CCDC174Q6PII3 467 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 FBXO11Q86XK2 927 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 ZNF507Q8TCN5 953 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 NOC4LQ9BVI4 516 aaKnown RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 GLIS2Q9BZE0 524 aaPredicted RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 THAP9Q9H5L6 903 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 PPP1R1BQ9UD71 204 aaPredicted RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 TRIM10Q9UDY6 481 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 PHLPP2Q6ZVD8 1323 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 POTEFA5A3E0 1075 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 FAM86B1E9PN63 330 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 FAM86B2P0C5J1 330 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 POTEIP0CG38 1075 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 TRIM21P19474 475 aaKnown RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 EEF1GP26641 437 aaKnown RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 FAM83BQ5T0W9 1011 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 SYDE2Q5VT97 1194 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 RSBN1LQ6PCB5 846 aaPredicted RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 POTEGQ6S5H5 508 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 POTEEQ6S8J3 1075 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 OGFOD1Q8N543 542 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 MAGEF1Q9HAY2 307 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 PSMC6P62333 389 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 FKBP1AP62942 108 aaKnown RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 CYP4A11Q02928 519 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 FBXO38Q6PIJ6 1188 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 UNC13DQ70J99 1090 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 MTERF4Q7Z6M4 381 aaKnown RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 NELFCDQ8IXH7 590 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 CCDC155Q8N6L0 562 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 KIFC2Q96AC6 838 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 ZNF70Q9UC06 446 aaPredicted RBP11.85□□□□□ -0.51
CUX1-221ENST00000622516 PRR12Q9ULL5 1215 aa11.85□□□□□ -0.51
CUX1-221ENST00000622516 ITIH6Q6UXX5 1313 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 GREB1LQ9C091 1923 aaPredicted RBP11.84□□□□□ -0.51
CUX1-221ENST00000622516 RASSF10A6NK89 507 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 SPDYE3A6NKU9 549 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 OPLAHO14841 1288 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 MED24O75448 989 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 ZNF569Q5MCW4 686 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 NCAPH2Q6IBW4 605 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 CCDC94Q9BW85 323 aaPredicted RBP11.84□□□□□ -0.51
CUX1-221ENST00000622516 BCAS3Q9H6U6 928 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 TMOD2Q9NZR1 351 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 STK17AQ9UEE5 414 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 LUC7L2Q9Y383 392 aaKnown RBP11.84□□□□□ -0.51
CUX1-221ENST00000622516 ENTPD3O75355 529 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 CFBP00751 764 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 NBPF9Q3BBW0 867 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 TMEM119Q4V9L6 283 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 MIIPQ5JXC2 388 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 MNS1Q8NEH6 495 aa11.84□□□□□ -0.51
CUX1-221ENST00000622516 BICDL2A1A5D9 508 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 KCNA3P22001 575 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 ORC2Q13416 577 aaPredicted RBP11.83□□□□□ -0.52
CUX1-221ENST00000622516 ARHGAP29Q52LW3 1261 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 DNAJC19Q96DA6 116 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 FAM207AQ9NSI2 230 aaPredicted RBP11.83□□□□□ -0.52
CUX1-221ENST00000622516 FBXO28Q9NVF7 368 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 COL4A5P29400 1685 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms