RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 PSTPIP2Q9H939 334 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 TRIM49BA6NDI0 452 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L15C9J2P7 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L13C9JLJ4 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L11C9JVI0 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L18D6R9N7 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L22D6RA61 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L17D6RBQ6 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L19D6RCP7 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L20D6RJB6 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 STX10O60499 249 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 RNF40O75150 1001 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 RPS6KA5O75582 802 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L24Q0WX57 530 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 QRICH1Q2TAL8 776 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 USP17L6PQ6QN14 398 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 MMS22LQ6ZRQ5 1243 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 TTLL6Q8N841 843 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 SUPT20HQ8NEM7 779 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 CUL5Q93034 780 aa18.35■□□□□ 0.53
CNOT3-208ENST00000613073 MMTAG2Q9BU76 263 aaKnown RBP18.35■□□□□ 0.53
CNOT3-208ENST00000613073 POTEMA6NI47 508 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 GH2P01242 217 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 IKQ13123 557 aaPredicted RBP18.34■□□□□ 0.53
CNOT3-208ENST00000613073 TBX2Q13207 712 aaPredicted RBP18.34■□□□□ 0.53
CNOT3-208ENST00000613073 RRP1BQ14684 758 aaKnown RBP18.34■□□□□ 0.53
CNOT3-208ENST00000613073 MCTP2Q6DN12 878 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 CDC23Q9UJX2 597 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 F5H6K3 240 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 MNAT1P51948 309 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 KLRC3Q07444 240 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 LARGE2Q8N3Y3 721 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 FAM71BQ8TC56 605 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 HNRNPLLQ8WVV9 542 aaKnown RBP18.34■□□□□ 0.53
CNOT3-208ENST00000613073 KAT2BQ92831 832 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 MTMR9Q96QG7 549 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 NYAP2Q9P242 653 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 RWDD2AQ9UIY3 292 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 PCDHA1Q9Y5I3 950 aa18.34■□□□□ 0.53
CNOT3-208ENST00000613073 GREB1LQ9C091 1923 aaPredicted RBP18.34■□□□□ 0.53
CNOT3-208ENST00000613073 KLRC4O43908 158 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 CCDC175P0C221 793 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 MRPL12P52815 198 aaKnown RBP18.33■□□□□ 0.53
CNOT3-208ENST00000613073 DNAJC21Q5F1R6 531 aaKnown RBP18.33■□□□□ 0.53
CNOT3-208ENST00000613073 FBXW10Q5XX13 1052 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 CC2D2BQ6DHV5 1058 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 TMEM179Q6ZVK1 233 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 NOA1Q8NC60 698 aaKnown RBP18.33■□□□□ 0.53
CNOT3-208ENST00000613073 MKL1Q969V6 931 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 ADD3Q9UEY8 706 aaKnown RBP18.33■□□□□ 0.53
CNOT3-208ENST00000613073 LRWD1Q9UFC0 647 aa18.33■□□□□ 0.53
CNOT3-208ENST00000613073 PSMD14O00487 310 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 PPFIA4O75335 1185 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 TAL1P17542 331 aaPredicted RBP18.33■□□□□ 0.52
CNOT3-208ENST00000613073 EFCAB13Q8IY85 973 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 SPICE1Q8N0Z3 855 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 IGSF22Q8N9C0 903 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 EEF2KMTQ96G04 330 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 VPS16Q9H269 839 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 RAB21Q9UL25 225 aa18.33■□□□□ 0.52
CNOT3-208ENST00000613073 ZNF646O15015 1829 aaPredicted RBP18.33■□□□□ 0.52
CNOT3-208ENST00000613073 KIF5CO60282 957 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 ABL1P00519 1130 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 DPEP1P16444 411 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 MMP14P50281 582 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 PMS1P54277 932 aaKnown RBP18.32■□□□□ 0.52
CNOT3-208ENST00000613073 CDC37Q16543 378 aaPredicted RBP18.32■□□□□ 0.52
CNOT3-208ENST00000613073 CEP112Q8N8E3 955 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 MTMR8Q96EF0 704 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 CXorf56Q9H5V9 222 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 CLK2P49760 499 aaKnown RBP18.32■□□□□ 0.52
CNOT3-208ENST00000613073 RAD9BQ6WBX8 426 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 AFAP1L1Q8TED9 768 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 CALML4Q96GE6 196 aa18.32■□□□□ 0.52
CNOT3-208ENST00000613073 ASIC1P78348 528 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 KRT31Q15323 416 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 USH1GQ495M9 461 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 RBM26Q5T8P6 1007 aaKnown RBP18.31■□□□□ 0.52
CNOT3-208ENST00000613073 PPP1R18Q6NYC8 613 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 CCDC91Q7Z6B0 441 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 SLC35F6Q8N357 371 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 MSANTD4Q8NCY6 345 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 DCAF4Q8WV16 495 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 NUDT12Q9BQG2 462 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 DDX25Q9UHL0 483 aaKnown RBP18.31■□□□□ 0.52
CNOT3-208ENST00000613073 MARCH6O60337 910 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 NDUFB10O96000 172 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 CCT5P48643 541 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 RSBN1LQ6PCB5 846 aaPredicted RBP18.31■□□□□ 0.52
CNOT3-208ENST00000613073 ADSSL1Q8N142 457 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 HPS3Q969F9 1004 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 TRIM9Q9C026 710 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 TAB2Q9NYJ8 693 aa18.31■□□□□ 0.52
CNOT3-208ENST00000613073 ENTPD3O75355 529 aa18.3■□□□□ 0.52
CNOT3-208ENST00000613073 ERLIN2O94905 339 aa18.3■□□□□ 0.52
CNOT3-208ENST00000613073 TMEM266Q2M3C6 531 aa18.3■□□□□ 0.52
CNOT3-208ENST00000613073 FILIP1LQ4L180 1135 aa18.3■□□□□ 0.52
CNOT3-208ENST00000613073 CTAGE1Q96RT6 745 aa18.3■□□□□ 0.52
CNOT3-208ENST00000613073 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.3■□□□□ 0.52
CNOT3-208ENST00000613073 A0A1W2PRG0 241 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms