RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 RNF26Q9BY78 433 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-215ENST00000601150 ZEB2O60315 1214 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 ADCY7P51828 1080 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 AK2P54819 239 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 STK3Q13188 491 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 UBE2SQ16763 222 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 TYW1BQ6NUM6 668 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 OR6J1Q8NGC5 347 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 SLC26A6Q9BXS9 759 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 RIC8AQ9NPQ8 531 aa19.36■□□□□ 0.69
TRIM28-215ENST00000601150 SPDYE3A6NKU9 549 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 CPLX1O14810 134 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 STAM2O75886 525 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 ARIH2O95376 493 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 NEK4P51957 841 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 RTP1P59025 263 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 SNX17Q15036 470 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 PKN1Q16512 942 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 XRRA1Q6P2D8 792 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 CPLX2Q6PUV4 134 aaKnown RBP19.35■□□□□ 0.69
TRIM28-215ENST00000601150 TRIM22Q8IYM9 498 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 GLT1D1Q96MS3 346 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 GLT8D2Q9H1C3 349 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 STARD7Q9NQZ5 370 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 MRVI1Q9Y6F6 885 aa19.35■□□□□ 0.69
TRIM28-215ENST00000601150 ELP1O95163 1332 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 SMCO2A6NFE2 343 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 CPT1AP50416 773 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 LY6KQ17RY6 165 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 BRDTQ58F21 947 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-215ENST00000601150 C1orf53Q5VUE5 145 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 KCNV1Q6PIU1 500 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 CCDC12Q8WUD4 166 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-215ENST00000601150 COPS5Q92905 334 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 SLKQ9H2G2 1235 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-215ENST00000601150 EHMT1Q9H9B1 1298 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 TPCN1Q9ULQ1 816 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 ATP11BQ9Y2G3 1177 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 GTF3C3Q9Y5Q9 886 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 CEP290O15078 2479 aa19.34■□□□□ 0.69
TRIM28-215ENST00000601150 CABYRO75952 493 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 RGS20O76081 388 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 GH1P01241 217 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 MRPS9P82933 396 aaKnown RBP19.33■□□□□ 0.68
TRIM28-215ENST00000601150 SSRP1Q08945 709 aaKnown RBP19.33■□□□□ 0.68
TRIM28-215ENST00000601150 TRIM60Q495X7 471 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 PCNX4Q63HM2 1172 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 CXCL17Q6UXB2 119 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 VTI1AQ96AJ9 217 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 ZFP91Q96JP5 570 aaPredicted RBP19.33■□□□□ 0.68
TRIM28-215ENST00000601150 DDX41Q9UJV9 622 aaKnown RBP19.33■□□□□ 0.68
TRIM28-215ENST00000601150 PCDHA6Q9UN73 950 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 PCDHA8Q9Y5H6 950 aa19.33■□□□□ 0.68
TRIM28-215ENST00000601150 ESYT2A0FGR8 921 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 PFKFB2O60825 505 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 PPFIA3O75145 1194 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 ARHGAP1Q07960 439 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 GNPTABQ3T906 1256 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 C22orf23Q9BZE7 217 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 POLR3EQ9NVU0 708 aa19.32■□□□□ 0.68
TRIM28-215ENST00000601150 DOCK5Q9H7D0 1870 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 A6NJR5 290 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 KPNA6O60684 536 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 CDKL5O76039 1030 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 FOSP01100 380 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-215ENST00000601150 TGFB3P10600 412 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 SCRN1Q12765 414 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 CCDC148Q8NFR7 591 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 INPP4AQ96PE3 977 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-215ENST00000601150 ZMYND12Q9H0C1 365 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 UPF2Q9HAU5 1272 aaKnown RBP19.31■□□□□ 0.68
TRIM28-215ENST00000601150 C6orf50Q9HD87 102 aa19.31■□□□□ 0.68
TRIM28-215ENST00000601150 ZMYND8Q9ULU4 1186 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-215ENST00000601150 A0A0U1RQG5 324 aaPredicted RBP19.3■□□□□ 0.68
TRIM28-215ENST00000601150 DEXIO95424 95 aa19.3■□□□□ 0.68
TRIM28-215ENST00000601150 ICAM3P32942 547 aa19.3■□□□□ 0.68
TRIM28-215ENST00000601150 RBM25P49756 843 aaKnown RBP19.3■□□□□ 0.68
TRIM28-215ENST00000601150 TLE2Q04725 743 aa19.3■□□□□ 0.68
TRIM28-215ENST00000601150 AP3B2Q13367 1082 aa19.3■□□□□ 0.68
TRIM28-215ENST00000601150 DHX37Q8IY37 1157 aaKnown RBP19.3■□□□□ 0.68
TRIM28-215ENST00000601150 EMID1Q96A84 441 aaPredicted RBP19.3■□□□□ 0.68
TRIM28-215ENST00000601150 SH3GLB2Q9NR46 395 aa19.3■□□□□ 0.68
TRIM28-215ENST00000601150 RTEL1Q9NZ71 1219 aa19.3■□□□□ 0.68
TRIM28-215ENST00000601150 ARVCFO00192 962 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 FIBPO43427 364 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 MYL3P08590 195 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 SYN1P17600 705 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 GNA11P29992 359 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 CLK2P49760 499 aaKnown RBP19.29■□□□□ 0.68
TRIM28-215ENST00000601150 PURAQ00577 322 aaKnown RBP19.29■□□□□ 0.68
TRIM28-215ENST00000601150 LAMC2Q13753 1193 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 MCTP2Q6DN12 878 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 NLRX1Q86UT6 975 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 AFG1LQ8WV93 481 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 KIF2CQ99661 725 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 ANO3Q9BYT9 981 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 TMEM260Q9NX78 707 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 VPS54Q9P1Q0 977 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 DNAH12Q6ZR08 3092 aa19.29■□□□□ 0.68
TRIM28-215ENST00000601150 MROH7Q68CQ1 1323 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms