RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 JDP2Q8WYK2 163 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 POTEB3A0JP26 581 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 POTECB2RU33 542 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 E9PMD0 336 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 IDEP14735 1019 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 SREBF1P36956 1147 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 SPIRE1Q08AE8 756 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 STIM1Q13586 685 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 POTEBQ6S5H4 581 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 SLC30A10Q6XR72 485 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 P2RX5Q93086 422 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 DHTKD1Q96HY7 919 aaPredicted RBP16.19■□□□□ 0.18
VRK3-217ENST00000599538 SEMA6BQ9H3T3 888 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 VCPKMTQ9H867 229 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 GOPCQ9HD26 462 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 SYNPO2Q9UMS6 1093 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 SPDYE3A6NKU9 549 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 ARHGAP6O43182 974 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 MED24O75448 989 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 CCNE1P24864 410 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 RASSF7Q02833 373 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 SPAG1Q07617 926 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 DGKZQ13574 1117 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 UNC13DQ70J99 1090 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 TEPSINQ96N21 525 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 KIAA1024Q9UPX6 916 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 BCS1LQ9Y276 419 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 SOWAHDA6NJG2 315 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 PHF20L1A8MW92 1017 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 FANCGO15287 622 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 STX10O60499 249 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 CFBP00751 764 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 MAP3K10Q02779 954 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 SAMD7Q7Z3H4 446 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 CSGALNACT2Q8N6G5 542 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 DNAJC19Q96DA6 116 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 ZFP91Q96JP5 570 aaPredicted RBP16.18■□□□□ 0.18
VRK3-217ENST00000599538 DESI2Q9BSY9 194 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 MTFR1LQ9H019 292 aa16.18■□□□□ 0.18
VRK3-217ENST00000599538 MFAP3LO75121 409 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 POLD1P28340 1107 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 SEMA3FQ13275 785 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 LRRC41Q15345 812 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 HYIQ5T013 277 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 CNNM4Q6P4Q7 775 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 SYT10Q6XYQ8 523 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 PPFIBP1Q86W92 1011 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 FBXO41Q8TF61 875 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 CCDC47Q96A33 483 aaKnown RBP16.17■□□□□ 0.18
VRK3-217ENST00000599538 NAP1L4Q99733 375 aaKnown RBP16.17■□□□□ 0.18
VRK3-217ENST00000599538 THAP9Q9H5L6 903 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 PAXBP1Q9Y5B6 917 aa16.17■□□□□ 0.18
VRK3-217ENST00000599538 NPHP3-ACAD11A0A0J9YXS1 232 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 PVALEFA0A1B0GWK0 134 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 SSBP05455 408 aaKnown RBP eCLIP16.16■□□□□ 0.18
VRK3-217ENST00000599538 CACNB1Q02641 598 aaPredicted RBP16.16■□□□□ 0.18
VRK3-217ENST00000599538 UBXN1Q04323 297 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 EHHADHQ08426 723 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 R3HDM1Q15032 1099 aaKnown RBP16.16■□□□□ 0.18
VRK3-217ENST00000599538 MOXD1Q6UVY6 613 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 RAD9BQ6WBX8 426 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 FGFBP2Q9BYJ0 223 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 RANBP17Q9H2T7 1088 aaKnown RBP16.16■□□□□ 0.18
VRK3-217ENST00000599538 PPP2R2CQ9Y2T4 447 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 ITIH6Q6UXX5 1313 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 POTEFA5A3E0 1075 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 MSH4O15457 936 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 POTEIP0CG38 1075 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 INPP5BP32019 993 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 UBXN2AP68543 259 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 NAA30Q147X3 362 aaPredicted RBP16.16■□□□□ 0.18
VRK3-217ENST00000599538 Q4G0T1 1027 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 TRIM65Q6PJ69 517 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 POTEGQ6S5H5 508 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 POTEEQ6S8J3 1075 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 ZNF507Q8TCN5 953 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 PANX2Q96RD6 677 aa16.16■□□□□ 0.18
VRK3-217ENST00000599538 A0A0U1RQJ8 604 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 PIK3CDO00329 1044 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 FOSP01100 380 aaPredicted RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 ZNF280AP59817 542 aaPredicted RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 PSMC6P62333 389 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 RAD51AP2Q09MP3 1159 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 TBC1D10BQ4KMP7 808 aaPredicted RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 CENPPQ6IPU0 288 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 ZNF710Q8N1W2 664 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 ANKRD20A12PQ8NF67 263 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 ATRIPQ8WXE1 791 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 ZNF341Q9BYN7 854 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 LGALS16A8MUM7 142 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 B4DLN1 442 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 MEIS1O00470 390 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 PES1O00541 588 aaKnown RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 ASNSP08243 561 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 EEF1GP26641 437 aaKnown RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 CIITAP33076 1130 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 GMPSP49915 693 aaPredicted RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 TNIP1Q15025 636 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 COBLL1Q53SF7 1204 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 NCAPH2Q6IBW4 605 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms