RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TBX3O15119 743 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 FOXN1O15353 648 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 SLC37A4O43826 429 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 TLR2O60603 784 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 CMA1P23946 247 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 LONP1P36776 959 aaKnown RBP17.49■□□□□ 0.39
UPF1-206ENST00000598471 UBXN2AP68543 259 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 PGM5Q15124 567 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 CEP55Q53EZ4 464 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 PRR16Q569H4 304 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 AXDND1Q5T1B0 1012 aaPredicted RBP17.49■□□□□ 0.39
UPF1-206ENST00000598471 SLFN12Q8IYM2 578 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 ABRAQ8N0Z2 381 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 FSIP1Q8NA03 581 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 IWS1Q96ST2 819 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 PDCD2LQ9BRP1 358 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 RAB34Q9BZG1 259 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 PORCNQ9H237 461 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 TMEM60Q9H2L4 133 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 EFCC1Q9HA90 598 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 FAM13BQ9NYF5 915 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 CPA4Q9UI42 421 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 TSKSQ9UJT2 592 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 MYH7BA7E2Y1 1941 aa17.49■□□□□ 0.39
UPF1-206ENST00000598471 VWA3AA6NCI4 1184 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 CA12O43570 354 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 STRNO43815 780 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 EDIL3O43854 480 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 TRPA1O75762 1119 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 BCRP11274 1271 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 NIPA1Q7RTP0 329 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 PLA2G4DQ86XP0 818 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 SYAP1Q96A49 352 aaPredicted RBP17.48■□□□□ 0.39
UPF1-206ENST00000598471 CLIC6Q96NY7 704 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 MRVI1Q9Y6F6 885 aa17.48■□□□□ 0.39
UPF1-206ENST00000598471 FAM86B1E9PN63 330 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 STAM2O75886 525 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 FAM86B2P0C5J1 330 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 MYCLP12524 364 aaPredicted RBP17.47■□□□□ 0.39
UPF1-206ENST00000598471 TXLNAP40222 546 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 CRHR2Q13324 411 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 RESP18Q5W5W9 173 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 C17orf99Q6UX52 265 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 FAM133AQ8N9E0 248 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 GPT2Q8TD30 523 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 AK8Q96MA6 479 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 FAM20AQ96MK3 541 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 MTMR9Q96QG7 549 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 MXRA8Q9BRK3 442 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 CSRNP2Q9H175 543 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 R3HDMLQ9H3Y0 253 aa17.47■□□□□ 0.39
UPF1-206ENST00000598471 LOC102724159A0A0B4J2E5 919 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 NR3C2P08235 984 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 TXKP42681 527 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 FXR2P51116 673 aaKnown RBP eCLIP17.46■□□□□ 0.397e-8■■■■□ 20.8
UPF1-206ENST00000598471 ALDH5A1P51649 535 aaPredicted RBP17.46■□□□□ 0.39
UPF1-206ENST00000598471 CNTN2Q02246 1040 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 PWP2Q15269 919 aaKnown RBP17.46■□□□□ 0.39
UPF1-206ENST00000598471 PLEKHH3Q7Z736 793 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 NLRX1Q86UT6 975 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 VSIG10LQ86VR7 867 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 IL31RAQ8NI17 732 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 BEGAINQ9BUH8 593 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 KCNMB3Q9NPA1 279 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 UBIAD1Q9Y5Z9 338 aa17.46■□□□□ 0.39
UPF1-206ENST00000598471 DNAJC25-GNG10A0A024R161 153 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 IGLV3-22A0A075B6J6 115 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 MEIS1O00470 390 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 TBC1D8O95759 1140 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 FAM160A1Q05DH4 1040 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 STXBP2Q15833 593 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 SHC4Q6S5L8 630 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 GPR142Q7Z601 462 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 LENG9Q96B70 501 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 CDHR1Q96JP9 859 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 PURBQ96QR8 312 aaKnown RBP17.45■□□□□ 0.38
UPF1-206ENST00000598471 PYM1Q9BRP8 204 aaKnown RBP17.45■□□□□ 0.38
UPF1-206ENST00000598471 ANP32EQ9BTT0 268 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 JADE2Q9NQC1 790 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 DDX19AQ9NUU7 478 aaKnown RBP17.45■□□□□ 0.38
UPF1-206ENST00000598471 SLC5A4Q9NY91 659 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 PCDHA12Q9UN75 941 aa17.45■□□□□ 0.38
UPF1-206ENST00000598471 A0A1B0GVL5 298 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 SLC15A5A6NIM6 579 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 PFKFB1P16118 471 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 LIG1P18858 919 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 ADORA2AP29274 412 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 TECP42680 631 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 MRPS9P82933 396 aaKnown RBP17.44■□□□□ 0.38
UPF1-206ENST00000598471 GRIN1Q05586 938 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 PDE4DQ08499 809 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 MTMR1Q13613 665 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 GNPTABQ3T906 1256 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 ETNPPLQ8TBG4 499 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 GPRASP2Q96D09 838 aa17.44■□□□□ 0.38
UPF1-206ENST00000598471 TTC12Q9H892 705 aaPredicted RBP17.44■□□□□ 0.38
UPF1-206ENST00000598471 FAM237AA0A1B0GTK4 181 aa17.43■□□□□ 0.38
UPF1-206ENST00000598471 SOWAHBA6NEL2 793 aa17.43■□□□□ 0.38
UPF1-206ENST00000598471 ASB14A6NK59 587 aa17.43■□□□□ 0.38
UPF1-206ENST00000598471 MSH4O15457 936 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms