RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 KRTAP9-2Q9BYQ4 174 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 PPARGC1AQ9UBK2 798 aaKnown RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 UBR1Q8IWV7 1749 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 EFCAB6Q5THR3 1501 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 WASHC2AQ641Q2 1341 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 SSU72P8A0A1W2PR75 194 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 MSCO60682 206 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 PLS3P13797 630 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 CCNFP41002 786 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 CBX2Q14781 532 aaPredicted RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 TCEAL1Q15170 157 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 CCDC144BQ3MJ40 725 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 ZNF648Q5T619 568 aaPredicted RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 C22orf34Q6ZV56 151 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 NAT16Q8N8M0 369 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 TMEM145Q8NBT3 493 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 SYTL5Q8TDW5 730 aaPredicted RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 TRIT1Q9H3H1 467 aaKnown RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 WHRNQ9P202 907 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 A0A1W2PQU0 124 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 KCNJ6P48051 423 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 IRAK1P51617 712 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 RTP1P59025 263 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 FXNQ16595 210 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 FAM209AQ5JX71 171 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 FAM9BQ8IZU0 186 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 ARHGEF4Q9NR80 690 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 PLEKHH1Q9ULM0 1364 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 CLTCL1P53675 1640 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 PCBP3P57721 371 aaKnown RBP4.38□□□□□ -1.71
ZNF540-207ENST00000589285 RNF4P78317 190 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 MTERF2Q49AM1 385 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 KCNT2Q6UVM3 1135 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 CBLL1Q75N03 491 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 LILRB2Q8N423 598 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 SLC43A3Q8NBI5 491 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 BVESQ8NE79 360 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 SNX11Q9Y5W9 270 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 KIF7Q2M1P5 1343 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 ZNF335Q9H4Z2 1342 aaPredicted RBP4.38□□□□□ -1.71
ZNF540-207ENST00000589285 METP08581 1390 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 RIMS2Q9UQ26 1411 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 XIRP1Q702N8 1843 aaKnown RBP4.38□□□□□ -1.71
ZNF540-207ENST00000589285 ANKRD34BA5PLL1 514 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 C2orf71A6NGG8 1288 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 PPM1BO75688 479 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 ADGRF1Q5T601 910 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 CKAP2LQ8IYA6 745 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 TAB3Q8N5C8 712 aaPredicted RBP4.38□□□□□ -1.71
ZNF540-207ENST00000589285 C19orf47Q8N9M1 422 aaKnown RBP4.38□□□□□ -1.71
ZNF540-207ENST00000589285 LINC00116Q8NCU8 138 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 ERVK-7P63135 1459 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 CDK12Q9NYV4 1490 aaPredicted RBP4.38□□□□□ -1.71
ZNF540-207ENST00000589285 SHPRHQ149N8 1683 aa4.38□□□□□ -1.71
ZNF540-207ENST00000589285 KRTAP9-6A0A140TA67 174 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 PRKCAP17252 672 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 CCDC184Q52MB2 194 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 CWF19L1Q69YN2 538 aaKnown RBP4.37□□□□□ -1.71
ZNF540-207ENST00000589285 DPH6Q7L8W6 267 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 ARHGEF39Q8N4T4 335 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 LINC01599Q8WXQ3 324 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 SHISA4Q96DD7 197 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 DEPDC7Q96QD5 511 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 PANK3Q9H999 370 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 FHOD1Q9Y613 1164 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 NKTRP30414 1462 aaKnown RBP4.37□□□□□ -1.71
ZNF540-207ENST00000589285 NUDT19A8MXV4 375 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 UNC13BO14795 1591 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 FAM153BP0C7A2 387 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 BMP8BP34820 402 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 AMPD2Q01433 879 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 FRS2Q8WU20 508 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 FAM168AQ92567 244 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 CENPJQ9HC77 1338 aaPredicted RBP4.37□□□□□ -1.71
ZNF540-207ENST00000589285 STRIP2Q9ULQ0 834 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 NPHP4O75161 1426 aaPredicted RBP4.37□□□□□ -1.71
ZNF540-207ENST00000589285 KCNK3O14649 394 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 SNRPB2P08579 225 aaKnown RBP4.37□□□□□ -1.71
ZNF540-207ENST00000589285 SEPHS1P49903 392 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 SSRP1Q08945 709 aaKnown RBP4.37□□□□□ -1.71
ZNF540-207ENST00000589285 THAP5Q7Z6K1 395 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 STK11IPQ8N1F8 1099 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 MYLIPQ8WY64 445 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 MAP6Q96JE9 813 aa4.37□□□□□ -1.71
ZNF540-207ENST00000589285 SPATA31E1Q6ZUB1 1445 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 TMEM2Q9UHN6 1383 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 ADCY3O60266 1144 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 TMF1P82094 1093 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 SERINC3Q13530 473 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 SLC51AQ86UW1 340 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 NUP43Q8NFH3 380 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 DPF3Q92784 378 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 MISP3Q96FF7 219 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 C8orf37Q96NL8 207 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 C14orf93Q9H972 538 aaKnown RBP4.36□□□□□ -1.71
ZNF540-207ENST00000589285 EMC9Q9Y3B6 208 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 PCDHA2Q9Y5H9 948 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 MYO5BQ9ULV0 1848 aa4.36□□□□□ -1.71
ZNF540-207ENST00000589285 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.36□□□□□ -1.71
ZNF540-207ENST00000589285 PDPK1O15530 556 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms