RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 VIPR1P32241 457 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 MAPKAPK2P49137 400 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 SRSF3P84103 164 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 OGFOD2Q6N063 350 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 ZC3H14Q6PJT7 736 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 TMC6Q7Z403 805 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 MTDHQ86UE4 582 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 HOMER1Q86YM7 354 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 RIOX2Q8IUF8 465 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 Q8N1Y9 231 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 ALG1Q9BT22 464 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 MRPL4Q9BYD3 311 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 SLC52A2Q9HAB3 445 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 NCOA5Q9HCD5 579 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 SIRT5Q9NXA8 310 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 PPARGC1AQ9UBK2 798 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 SFMBT1Q9UHJ3 866 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 SIT1Q9Y3P8 196 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 PCDHA8Q9Y5H6 950 aa6.74□□□□□ -1.33
SMCHD1-204ENST00000581226 MYOCOSA0A1B0GUC4 107 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 TLDC2A0PJX2 215 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 PPP1R12AO14974 1030 aaPredicted RBP6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 EFCAB14O75071 495 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 RAPGEF3O95398 923 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 GRK2P25098 689 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 GRK3P35626 688 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 PRR5P85299 388 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 GUCY1A3Q02108 690 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 FZD5Q13467 585 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 PLEKHN1Q494U1 663 aaPredicted RBP6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 DCP2Q8IU60 420 aaKnown RBP6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 APPBP2Q92624 585 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 KCNN1Q92952 543 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 PEX11GQ96HA9 241 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 JAM3Q9BX67 310 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 MCOLN1Q9GZU1 580 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 AP5M1Q9H0R1 490 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 CDIP1Q9H305 208 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 FANCLQ9NW38 375 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 TBX22Q9Y458 520 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 PCDHA9Q9Y5H5 950 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 HCFC2Q9Y5Z7 792 aa6.73□□□□□ -1.33
SMCHD1-204ENST00000581226 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 PLD2O14939 933 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 DGKIO75912 1065 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 CRTAMO95727 393 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 SOD2P04179 222 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 APPP05067 770 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 NAT1P18440 290 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 MESP2Q0VG99 397 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 PAK1Q13153 545 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 SLC7A14Q8TBB6 771 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 FAM84AQ96KN4 292 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 KCNJ15Q99712 375 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 EPB41L1Q9H4G0 881 aa6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 TMA7Q9Y2S6 64 aaKnown RBP6.72□□□□□ -1.33
SMCHD1-204ENST00000581226 TEX51A0A1B0GUA7 166 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 FAM47E-STBD1D6RA91 191 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 CDC45O75419 566 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 ZBTB7AO95365 584 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 TCEA2Q15560 299 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 TRIM61Q5EBN2 209 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 ZNF648Q5T619 568 aaPredicted RBP6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 C16orf86Q6ZW13 317 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 SYDE1Q6ZW31 735 aaPredicted RBP6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 SYNPOQ8N3V7 929 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 GSTCDQ8NEC7 633 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 SEC14L1Q92503 715 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 MAGEB10Q96LZ2 347 aaPredicted RBP6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 CLUHP3Q96NS8 147 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 SLC38A3Q99624 504 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 IPPKQ9H8X2 491 aa6.71□□□□□ -1.34
SMCHD1-204ENST00000581226 SGSM2O43147 1006 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 TMEM253P0C7T8 217 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 SLC6A11P48066 632 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 ZNF200P98182 395 aaPredicted RBP6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 SLC9A5Q14940 896 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 CHRNA2Q15822 529 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 FNDC3BQ53EP0 1204 aaKnown RBP6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 STEAP3Q658P3 488 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 BRAPQ7Z569 592 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 POU5F2Q8N7G0 328 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 TSPAN17Q96FV3 270 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 SGPP1Q9BX95 441 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 BCAS3Q9H6U6 928 aa6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 MBD1Q9UIS9 605 aaPredicted RBP6.7□□□□□ -1.34
SMCHD1-204ENST00000581226 HGSO14964 777 aaPredicted RBP6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 KCNQ2O43526 872 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 SEMA7AO75326 666 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 RASGRP1O95267 797 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 SRGAP2CP0DJJ0 459 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 GNAT1P11488 350 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 SPIRE1Q08AE8 756 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 MILR1Q7Z6M3 343 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 LDHDQ86WU2 507 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 ZC3H7AQ8IWR0 971 aaKnown RBP6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 PCDH19Q8TAB3 1148 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 PIP4K2CQ8TBX8 421 aa6.69□□□□□ -1.34
SMCHD1-204ENST00000581226 ALG3Q92685 438 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms