RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PTGS1P23219 599 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 CST5P28325 142 aaPredicted RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 CNTN2Q02246 1040 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 TNFAIP2Q03169 654 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 IFIT1BQ5T764 474 aaKnown RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 RASIP1Q5U651 963 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 ZNF467Q7Z7K2 595 aaPredicted RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 MICU3Q86XE3 530 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 CCDC144CPQ8IYA2 1237 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 TRIM22Q8IYM9 498 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 NSUN7Q8NE18 718 aaKnown RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 FAM122AQ96E09 287 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 ZSCAN16Q9H4T2 348 aaPredicted RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 NCOA5Q9HCD5 579 aaKnown RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 INCENPQ9NQS7 918 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 GPHNQ9NQX3 736 aaPredicted RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 MTMR6Q9Y217 621 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.7□□□□□ -0.54
SS18-210ENST00000578700 GREB1LQ9C091 1923 aaPredicted RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 PRDM1O75626 825 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 CD4P01730 458 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 TSPY3P0CV98 308 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 TSPY8P0CW00 308 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 RASA1P20936 1047 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 TFF2Q03403 129 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 IKQ13123 557 aaPredicted RBP11.69□□□□□ -0.54
SS18-210ENST00000578700 ITGA7Q13683 1181 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 TRIM29Q14134 588 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 PPP2R2DQ66LE6 453 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 EEPD1Q7L9B9 569 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 RGS22Q8NE09 1264 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 ZKSCAN3Q9BRR0 538 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 AP5M1Q9H0R1 490 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 TRPV6Q9H1D0 765 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 UPF3AQ9H1J1 476 aaKnown RBP11.69□□□□□ -0.54
SS18-210ENST00000578700 NYAP2Q9P242 653 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 FEM1BQ9UK73 627 aa11.69□□□□□ -0.54
SS18-210ENST00000578700 RFXAPO00287 272 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 PRPF40AO75400 957 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 DDAH1O94760 285 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 MBD3O95983 291 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 PSMC6P62333 389 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 KRT85P78386 507 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 AKAP17AQ02040 695 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 SSRP1Q08945 709 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 RTN1Q16799 776 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 ZNF654Q8IZM8 581 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 LRRC47Q8N1G4 583 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 CHST13Q8NET6 341 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 SCLYQ96I15 445 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 C8orf76Q96K31 380 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 FGD4Q96M96 766 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 KAT14Q9H8E8 782 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 CERS4Q9HA82 394 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 SLC38A10Q9HBR0 1119 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 RBM28Q9NW13 759 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 ORC3Q9UBD5 711 aaPredicted RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 FBXO40Q9UH90 709 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 SLC4A7Q9Y6M7 1214 aa11.68□□□□□ -0.54
SS18-210ENST00000578700 DDX49Q9Y6V7 483 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 TCF20Q9UGU0 1960 aaKnown RBP11.68□□□□□ -0.54
SS18-210ENST00000578700 TMEM232C9JQI7 657 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 ATP2A1O14983 1001 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 CTAGE5O15320 804 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 ZEB2O60315 1214 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 B4GALT4O60513 344 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 CTDNEP1O95476 244 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 KIF5BP33176 963 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 SNAP25P60880 206 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 TFAP4Q01664 338 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 GNL2Q13823 731 aaKnown RBP11.67□□□□□ -0.54
SS18-210ENST00000578700 FSCN1Q16658 493 aaKnown RBP11.67□□□□□ -0.54
SS18-210ENST00000578700 PPP4R3BQ5MIZ7 849 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 SLFN13Q68D06 897 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 TLK2Q86UE8 772 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 RAB11FIP4Q86YS3 637 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 RPUSD2Q8IZ73 545 aaKnown RBP11.67□□□□□ -0.54
SS18-210ENST00000578700 CTCFLQ8NI51 663 aaPredicted RBP11.67□□□□□ -0.54
SS18-210ENST00000578700 AGBL1Q96MI9 1066 aa11.67□□□□□ -0.54
SS18-210ENST00000578700 ASTN1O14525 1302 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 SOWAHBA6NEL2 793 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 ASB14A6NK59 587 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 CABYRO75952 493 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 BMP3P12645 472 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 ALAS1P13196 640 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 XBP1P17861 261 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 PLA2G5P39877 138 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 KCNQ1P51787 676 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 FOXD4L6Q3SYB3 417 aaPredicted RBP11.66□□□□□ -0.54
SS18-210ENST00000578700 FOXD4L3Q6VB84 417 aaPredicted RBP11.66□□□□□ -0.54
SS18-210ENST00000578700 DEFB128Q7Z7B8 93 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 DGKHQ86XP1 1220 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 ENAHQ8N8S7 591 aaPredicted RBP11.66□□□□□ -0.54
SS18-210ENST00000578700 FANCBQ8NB91 859 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 CEP95Q96GE4 821 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 ZNF396Q96N95 335 aaPredicted RBP11.66□□□□□ -0.54
SS18-210ENST00000578700 NOC4LQ9BVI4 516 aaKnown RBP11.66□□□□□ -0.54
SS18-210ENST00000578700 SCAND2PQ9GZW5 306 aaPredicted RBP11.66□□□□□ -0.54
SS18-210ENST00000578700 KATNBL1Q9H079 304 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 ACAD9Q9H845 621 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms