RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SLC6A18Q96N87 628 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 HAUS7Q99871 368 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 TMX4Q9H1E5 349 aaPredicted RBP7.19□□□□□ -1.26
VPS53-219ENST00000576019 SH2B1Q9NRF2 756 aaPredicted RBP7.19□□□□□ -1.26
VPS53-219ENST00000576019 CACNA2D2Q9NY47 1150 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 SNCAIPQ9Y6H5 919 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 BAHCC1Q9P281 2608 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 ADAMTSL1Q8N6G6 1762 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 A0A0U1RQG5 324 aaPredicted RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 M0R2C6 588 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 TBX3O15119 743 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 PRKD3O94806 890 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 ECEL1O95672 775 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 PGRP06401 933 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 MYBL2P10244 700 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 DPEP1P16444 411 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 BPIP17213 487 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 KCNA3P22001 575 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 IGFALSP35858 605 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 PMS1P54277 932 aaKnown RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 MAP3K12Q12852 859 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 BBS9Q3SYG4 887 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 CFAP100Q494V2 611 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 TMEM201Q5SNT2 666 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 HEATR6Q6AI08 1181 aaKnown RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 ERAP2Q6P179 960 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 RIPOR1Q6ZS17 1223 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 CTU1Q7Z7A3 348 aaKnown RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 TMTC2Q8N394 836 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 MICALL1Q8N3F8 863 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 GSTCDQ8NEC7 633 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 MYRIPQ8NFW9 859 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 DDX54Q8TDD1 881 aaKnown RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 SCLYQ96I15 445 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 SENP7Q9BQF6 1050 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 SARGQ9BW04 601 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS53-219ENST00000576019 RRP7BPQ9NSQ0 103 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 DNAJB12Q9NXW2 375 aaKnown RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 FBXO9Q9UK97 447 aaPredicted RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 APOBEC2Q9Y235 224 aaKnown RBP7.18□□□□□ -1.26
VPS53-219ENST00000576019 SPEF1Q9Y4P9 236 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 PLEKHH1Q9ULM0 1364 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 EYSQ5T1H1 3165 aa7.18□□□□□ -1.26
VPS53-219ENST00000576019 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 DCDC2CA8MYV0 355 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 C9IYK1 514 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 EXOC5O00471 708 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 BNIP3LO60238 219 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 MT-CO1P00395 513 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 PF4V1P10720 104 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 BDNFP23560 247 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 GRK4P32298 578 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 IARSP41252 1262 aaKnown RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 SMCPP49901 116 aaPredicted RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 GRM1Q13255 1194 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 GRB10Q13322 594 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 UBAP2LQ14157 1087 aaKnown RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 LBRQ14739 615 aaKnown RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 FAM83BQ5T0W9 1011 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 MRPL14Q6P1L8 145 aaKnown RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 MORC1Q86VD1 984 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 TMEM192Q8IY95 271 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 VPS37AQ8NEZ2 397 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 PJA1Q8NG27 643 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 OR2W6PQ8NHA6 318 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 ABHD17AQ96GS6 310 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 UBE2OQ9C0C9 1292 aaKnown RBP7.17□□□□□ -1.26
VPS53-219ENST00000576019 ZBTB21Q9ULJ3 1066 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 TRIM33Q9UPN9 1127 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 FAM50BQ9Y247 325 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 ANKARQ7Z5J8 1434 aa7.17□□□□□ -1.26
VPS53-219ENST00000576019 TOGARAM1Q9Y4F4 1720 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 APAF1O14727 1248 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 CBFA2T2O43439 604 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 CPB1P15086 417 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 FLT3P36888 993 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 TRAPPC10P48553 1259 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 GABREP78334 506 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 RASSF7Q02833 373 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 GSTM4Q03013 218 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 TMEM95Q3KNT9 176 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 PIK3R6Q5UE93 754 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 ANO1Q5XXA6 986 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 CDCA2Q69YH5 1023 aaPredicted RBP7.16□□□□□ -1.26
VPS53-219ENST00000576019 SMIM5Q71RC9 77 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 ACSF2Q96CM8 615 aaPredicted RBP7.16□□□□□ -1.26
VPS53-219ENST00000576019 LRGUKQ96M69 825 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 ADAM19Q9H013 955 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 NUCKS1Q9H1E3 243 aaKnown RBP7.16□□□□□ -1.26
VPS53-219ENST00000576019 CCDC86Q9H6F5 360 aaKnown RBP7.16□□□□□ -1.26
VPS53-219ENST00000576019 CASS4Q9NQ75 786 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 ATG3Q9NT62 314 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 PUF60Q9UHX1 559 aaKnown RBP7.16□□□□□ -1.26
VPS53-219ENST00000576019 CSADQ9Y600 493 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 C5P01031 1676 aa7.16□□□□□ -1.26
VPS53-219ENST00000576019 RBBP6Q7Z6E9 1792 aaKnown RBP7.15□□□□□ -1.26
VPS53-219ENST00000576019 PRUNE2Q8WUY3 3088 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 FAM177BA6PVY3 158 aa7.15□□□□□ -1.26
VPS53-219ENST00000576019 ZNF891A8MT65 544 aaPredicted RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms