RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 FGD4Q96M96 766 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 TAAR1Q96RJ0 339 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 TMEM121BQ9BXQ6 578 aaPredicted RBP9.66□□□□□ -0.86
SF3B3-212ENST00000568539 ANO3Q9BYT9 981 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 CASP8AP2Q9UKL3 1982 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 FKTNO75072 461 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 F13A1P00488 732 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 HOXC6P09630 235 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 SREBF1P36956 1147 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 NONOQ15233 471 aaKnown RBP eCLIP9.65□□□□□ -0.86
SF3B3-212ENST00000568539 PPP1R15BQ5SWA1 713 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 BRAPQ7Z569 592 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 DNERQ8NFT8 737 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 CD99L2Q8TCZ2 262 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 NSUN6Q8TEA1 469 aaKnown RBP9.65□□□□□ -0.86
SF3B3-212ENST00000568539 SOCS4Q8WXH5 440 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 ERO1AQ96HE7 468 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 RMDN3Q96TC7 470 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 ZSCAN16Q9H4T2 348 aaPredicted RBP9.65□□□□□ -0.86
SF3B3-212ENST00000568539 PXMP2Q9NR77 195 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 CHMP5Q9NZZ3 219 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 GJD2Q9UKL4 321 aa9.65□□□□□ -0.86
SF3B3-212ENST00000568539 DIS3Q9Y2L1 958 aaKnown RBP9.65□□□□□ -0.86
SF3B3-212ENST00000568539 COL11A1P12107 1806 aaPredicted RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 TULP1O00294 542 aaPredicted RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 EDIL3O43854 480 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 EIF2AK2P19525 551 aaKnown RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 EDNRBP24530 442 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 ALDH5A1P51649 535 aaPredicted RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 ARHGAP4P98171 946 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 MAP2K5Q13163 448 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 PGM5Q15124 567 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 INF2Q27J81 1249 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 FOXD4L5Q5VV16 416 aaPredicted RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 ARHGEF16Q5VV41 709 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 DPP9Q86TI2 863 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 IL31RAQ8NI17 732 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 NPLOC4Q8TAT6 608 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 TBCKQ8TEA7 893 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 FOXD4L4Q8WXT5 416 aaPredicted RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 NUDT12Q9BQG2 462 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 PDCD2LQ9BRP1 358 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 EHMT1Q9H9B1 1298 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 ADD3Q9UEY8 706 aaKnown RBP9.64□□□□□ -0.87
SF3B3-212ENST00000568539 GABRQQ9UN88 632 aa9.64□□□□□ -0.87
SF3B3-212ENST00000568539 LOC102724159A0A0B4J2E5 919 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 WNT7AO00755 349 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 GNRH1P01148 92 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 NR3C2P08235 984 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 CYP3A4P08684 503 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 RGS2P41220 211 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 TRAPPC10P48553 1259 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 TOB1P50616 345 aaPredicted RBP9.63□□□□□ -0.87
SF3B3-212ENST00000568539 USP11P51784 963 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 UBXN2AP68543 259 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 MRPS9P82933 396 aaKnown RBP9.63□□□□□ -0.87
SF3B3-212ENST00000568539 PRKCZQ05513 592 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 PWP2Q15269 919 aaKnown RBP9.63□□□□□ -0.87
SF3B3-212ENST00000568539 RILPL1Q5EBL4 403 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 MYSM1Q5VVJ2 828 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 PCNX4Q63HM2 1172 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 FAM173BQ6P4H8 233 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 MAMDC4Q6UXC1 1216 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 NEK8Q86SG6 692 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 VSIG10LQ86VR7 867 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 MORC4Q8TE76 937 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 MAML3Q96JK9 1138 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 IWS1Q96ST2 819 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 APBA2Q99767 749 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 SLC5A4Q9NY91 659 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 SRRDQ9UH36 339 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 DDX49Q9Y6V7 483 aaKnown RBP9.63□□□□□ -0.87
SF3B3-212ENST00000568539 ZNF236Q9UL36 1845 aa9.63□□□□□ -0.87
SF3B3-212ENST00000568539 IGHA2P01877 340 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 XRCC5P13010 732 aaKnown RBP9.62□□□□□ -0.87
SF3B3-212ENST00000568539 CYP2B6P20813 491 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 HOXD10P28358 340 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 CIITAP33076 1130 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 FLT3LGP49771 235 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 IRF5Q13568 498 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 ARHGEF6Q15052 776 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 LETM2Q2VYF4 491 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 XRRA1Q6P2D8 792 aa9.62□□□□□ -0.87
SF3B3-212ENST00000568539 NOL7Q9UMY1 257 aaKnown RBP9.62□□□□□ -0.87
SF3B3-212ENST00000568539 IGLV3-22A0A075B6J6 115 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 CYP3A7-CYP3A51PA0A087WV96 503 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 ASB14A6NK59 587 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 B4DLN1 442 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 FAM86B1E9PN63 330 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 STAM2O75886 525 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 TDP2O95551 362 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 FAM86B2P0C5J1 330 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 MYCLP12524 364 aaPredicted RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 GCFC2P16383 781 aaKnown RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 ITGB5P18084 799 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 ATP2B1P20020 1258 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 CYP3A7P24462 503 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 CCND2P30279 289 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 PRMT2P55345 433 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 FOXK1P85037 733 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms