RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PPARAQ07869 468 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 SYDE2Q5VT97 1194 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 DCAF4Q8WV16 495 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 ALG1Q9BT22 464 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 NAPBQ9H115 298 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 GPCPD1Q9NPB8 672 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 IL17RBQ9NRM6 502 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 HDAC6Q9UBN7 1215 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 GTF2IRD1Q9UHL9 959 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 ST18O60284 1047 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 LGR5O75473 907 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 CASTP20810 708 aaKnown RBP19.1■□□□□ 0.65
CLK3-223ENST00000568488 EDNRBP24530 442 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 RBL2Q08999 1139 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 CLUL1Q15846 466 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 LY6KQ17RY6 165 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 ZNF618Q5T7W0 954 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 SEPT14Q6ZU15 432 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 CLEC4DQ8WXI8 215 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 KAT2BQ92831 832 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 SAMD11Q96NU1 681 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 NSUN3Q9H649 340 aaKnown RBP19.1■□□□□ 0.65
CLK3-223ENST00000568488 INCENPQ9NQS7 918 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 ECHDC1Q9NTX5 307 aa19.1■□□□□ 0.65
CLK3-223ENST00000568488 FRMPD2Q68DX3 1309 aaPredicted RBP19.09■□□□□ 0.65
CLK3-223ENST00000568488 H3BNC9 293 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 GH1P01241 217 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 ZFYP08048 801 aaPredicted RBP19.09■□□□□ 0.65
CLK3-223ENST00000568488 PRSS33Q8NF86 280 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 DBF4BQ8NFT6 615 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 DNERQ8NFT8 737 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 YME1L1Q96TA2 773 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 LRRCC1Q9C099 1032 aa19.09■□□□□ 0.65
CLK3-223ENST00000568488 UPP2O95045 317 aa19.08■□□□□ 0.64
CLK3-223ENST00000568488 PSEN2P49810 448 aa19.08■□□□□ 0.64
CLK3-223ENST00000568488 PTPN5P54829 565 aa19.08■□□□□ 0.64
CLK3-223ENST00000568488 HTRA4P83105 476 aaPredicted RBP19.08■□□□□ 0.64
CLK3-223ENST00000568488 PTK7Q13308 1070 aa19.08■□□□□ 0.64
CLK3-223ENST00000568488 IER5LQ5T953 404 aa19.08■□□□□ 0.64
CLK3-223ENST00000568488 SEC62Q99442 399 aaKnown RBP19.08■□□□□ 0.64
CLK3-223ENST00000568488 RANBP6O60518 1105 aaKnown RBP19.07■□□□□ 0.64
CLK3-223ENST00000568488 ZNF200P98182 395 aaPredicted RBP19.07■□□□□ 0.64
CLK3-223ENST00000568488 CTDSPL2Q05D32 466 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 ARHGAP1Q07960 439 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 MBTPS1Q14703 1052 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 DGKDQ16760 1214 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 CCDC62Q6P9F0 684 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 TRAF7Q6Q0C0 670 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 BTNL9Q6UXG8 535 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 RPAINQ86UA6 219 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 RNF135Q8IUD6 432 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 TMEM192Q8IY95 271 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 SP7Q8TDD2 431 aaPredicted RBP19.07■□□□□ 0.64
CLK3-223ENST00000568488 WNT8BQ93098 351 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 POP1Q99575 1024 aaKnown RBP19.07■□□□□ 0.64
CLK3-223ENST00000568488 ZNF318Q5VUA4 2279 aa19.07■□□□□ 0.64
CLK3-223ENST00000568488 TRIOO75962 3097 aa19.06■□□□□ 0.64
CLK3-223ENST00000568488 HERC4Q5GLZ8 1057 aaPredicted RBP19.06■□□□□ 0.64
CLK3-223ENST00000568488 TSHZ3Q63HK5 1081 aa19.06■□□□□ 0.64
CLK3-223ENST00000568488 DHX37Q8IY37 1157 aaKnown RBP19.06■□□□□ 0.64
CLK3-223ENST00000568488 PBXIP1Q96AQ6 731 aa19.06■□□□□ 0.64
CLK3-223ENST00000568488 USP34Q70CQ2 3546 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 LTBRP36941 435 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 MFSD10Q14728 455 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 SMAD2Q15796 467 aaKnown RBP19.05■□□□□ 0.64
CLK3-223ENST00000568488 KIAA0753Q2KHM9 967 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 TRIM71Q2Q1W2 868 aaKnown RBP19.05■□□□□ 0.64
CLK3-223ENST00000568488 FBXO11Q86XK2 927 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 EDAQ92838 391 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 KATNAL1Q9BW62 490 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 PNMA2Q9UL42 364 aa19.05■□□□□ 0.64
CLK3-223ENST00000568488 EMSYQ7Z589 1322 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 RSPH10B2B2RC85 870 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 MBTPS2O43462 519 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 NCK2O43639 380 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 RSPH10BP0C881 870 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 THPOP40225 353 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 DLX2Q07687 328 aaPredicted RBP19.04■□□□□ 0.64
CLK3-223ENST00000568488 COL19A1Q14993 1142 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 USH1GQ495M9 461 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 SUGP1Q8IWZ8 645 aaKnown RBP19.04■□□□□ 0.64
CLK3-223ENST00000568488 GPATCH3Q96I76 525 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 IGFLR1Q9H665 355 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 ZBTB40Q9NUA8 1239 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLK3-223ENST00000568488 C5orf42Q9H799 3197 aa19.04■□□□□ 0.64
CLK3-223ENST00000568488 STXBP3O00186 592 aa19.03■□□□□ 0.64
CLK3-223ENST00000568488 ZNF286BP0CG31 522 aa19.03■□□□□ 0.64
CLK3-223ENST00000568488 TOP1MTQ969P6 601 aa19.03■□□□□ 0.64
CLK3-223ENST00000568488 PRRX2Q99811 253 aa19.03■□□□□ 0.64
CLK3-223ENST00000568488 TOMM22Q9NS69 142 aa19.03■□□□□ 0.64
CLK3-223ENST00000568488 TMEM221A6NGB7 291 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 M0R296 226 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 GFRA3O60609 400 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 CSPG5O95196 566 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 MS4A1P11836 297 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 HYAL1Q12794 435 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 STXBP2Q15833 593 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 TRIM67Q6ZTA4 783 aa19.02■□□□□ 0.64
CLK3-223ENST00000568488 BMP8AQ7Z5Y6 402 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms