RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 KCNB1Q14721 858 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 DOK7Q18PE1 504 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 GRIPAP1Q4V328 841 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 ZNF658Q5TYW1 1059 aaPredicted RBP8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 RRAGBQ5VZM2 374 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 SPECC1LQ69YQ0 1117 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 TMC7Q7Z402 723 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 NEK8Q86SG6 692 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 OGFOD1Q8N543 542 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 RASGRP4Q8TDF6 673 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 ZNF622Q969S3 477 aaKnown RBP eCLIP8.16□□□□□ -1.12e-6■■□□□ 11.7
HERPUD1-209ENST00000564678 ARMC5Q96C12 935 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 MS4A3Q96HJ5 214 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 C16orf45Q96MC5 204 aaPredicted RBP8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 MED15Q96RN5 788 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 PIGSQ96S52 555 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 SPOCK3Q9BQ16 436 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 IDI2Q9BXS1 227 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 CXXC1Q9P0U4 656 aaPredicted RBP8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 BOLA1Q9Y3E2 137 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 PNMA6FA0A0J9YX94 578 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 F8W031 263 aaPredicted RBP8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 PPFIA4O75335 1185 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 AKR1B1P15121 316 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 SHMT1P34896 483 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 SPAG1Q07617 926 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 ZNF543Q08ER8 600 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 SYCP1Q15431 976 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 FILIP1LQ4L180 1135 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 CDKAL1Q5VV42 579 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 CEP135Q66GS9 1140 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 C2CD5Q86YS7 1000 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 REXO1Q8N1G1 1221 aaKnown RBP8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 MKL1Q969V6 931 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 GLT8D2Q9H1C3 349 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 SAMSN1Q9NSI8 373 aaKnown RBP8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 KBTBD4Q9NVX7 518 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 PI4KBQ9UBF8 816 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 RWDD2AQ9UIY3 292 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 PCDHGB7Q9Y5F8 929 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 RGPD3A6NKT7 1758 aaPredicted RBP8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 RGPD4Q7Z3J3 1758 aa8.15□□□□□ -1.1
HERPUD1-209ENST00000564678 ARHGAP6O43182 974 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 CTIFO43310 598 aaKnown RBP8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 STX10O60499 249 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 RPN1P04843 607 aaKnown RBP8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 OR52Z1P0C646 297 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 CD44P16070 742 aaKnown RBP8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 RXRBP28702 533 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 HOXA7P31268 230 aaPredicted RBP8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 PPP1R2P41236 205 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 NR1H3Q13133 447 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 E4F1Q66K89 784 aaPredicted RBP8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 HOMER1Q86YM7 354 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 SUPT20HQ8NEM7 779 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 PTCD2Q8WV60 388 aaKnown RBP8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 MTRQ99707 1265 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 TMEM60Q9H2L4 133 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 VAT1LQ9HCJ6 419 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 INTS13Q9NVM9 706 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 KIAA1024Q9UPX6 916 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 SYNRGQ9UMZ2 1314 aa8.15□□□□□ -1.11
HERPUD1-209ENST00000564678 CREB3O43889 395 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 CCNT1O60563 726 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 SCNN1DP51172 638 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 AMPD3Q01432 767 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 PDIA5Q14554 519 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 KARSQ15046 597 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 LETM2Q2VYF4 491 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 DACT2Q5SW24 774 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 C6orf132Q5T0Z8 1188 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 KIF18AQ8NI77 898 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 TBCKQ8TEA7 893 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 MTMR8Q96EF0 704 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 DUSP9Q99956 384 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 UBA5Q9GZZ9 404 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 PDCL3Q9H2J4 239 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 KANSL2Q9H9L4 492 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 NYAP2Q9P242 653 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 ADD3Q9UEY8 706 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 GREB1LQ9C091 1923 aaPredicted RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 COL11A2P13942 1736 aaPredicted RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 H7C1D1 291 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 RHOBTB3O94955 611 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 HSD3B2P26439 372 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 ADCY7P51828 1080 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 MRPL12P52815 198 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 PAK1Q13153 545 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 STIM1Q13586 685 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 HSP90AA2PQ14568 343 aaPredicted RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 ZNF394Q53GI3 561 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 PPP4R3AQ6IN85 833 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 APTXQ7Z2E3 356 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 TRMT44Q8IYL2 757 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 IGSF22Q8N9C0 903 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 ANKRD20A12PQ8NF67 263 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 C7orf43Q8WVR3 580 aa8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 CCDC47Q96A33 483 aaKnown RBP8.14□□□□□ -1.11
HERPUD1-209ENST00000564678 NAP1L4Q99733 375 aaKnown RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms