RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ADGRF4Q8IZF3 695 aa15□□□□□ -0.01
CLK3-215ENST00000564353 UBXN6Q9BZV1 441 aa15□□□□□ -0.01
CLK3-215ENST00000564353 HAUS4Q9H6D7 363 aa15□□□□□ -0.01
CLK3-215ENST00000564353 ZNF287Q9HBT7 754 aa15□□□□□ -0.01
CLK3-215ENST00000564353 ARHGAP20Q9P2F6 1191 aa15□□□□□ -0.01
CLK3-215ENST00000564353 LRRC53A6NM62 1247 aa15□□□□□ -0.01
CLK3-215ENST00000564353 TULP1O00294 542 aaPredicted RBP15□□□□□ -0.01
CLK3-215ENST00000564353 EIF4A3P38919 411 aaKnown RBP15□□□□□ -0.01
CLK3-215ENST00000564353 PRPHP41219 470 aa15□□□□□ -0.01
CLK3-215ENST00000564353 RNASE9P60153 205 aaKnown RBP15□□□□□ -0.01
CLK3-215ENST00000564353 SLC7A5Q01650 507 aa15□□□□□ -0.01
CLK3-215ENST00000564353 PPARDQ03181 441 aa15□□□□□ -0.01
CLK3-215ENST00000564353 GFPT1Q06210 699 aaPredicted RBP15□□□□□ -0.01
CLK3-215ENST00000564353 CERS5Q8N5B7 392 aa15□□□□□ -0.01
CLK3-215ENST00000564353 COG1Q8WTW3 980 aa15□□□□□ -0.01
CLK3-215ENST00000564353 HDAC7Q8WUI4 952 aa15□□□□□ -0.01
CLK3-215ENST00000564353 C7orf25Q9BPX7 421 aa15□□□□□ -0.01
CLK3-215ENST00000564353 NDST4Q9H3R1 872 aa15□□□□□ -0.01
CLK3-215ENST00000564353 CASZ1Q86V15 1759 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 A0A1W2PQC6 194 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 BICDL2A1A5D9 508 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 MAP2K7O14733 419 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 KRT86O43790 486 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 GYS1P13807 737 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 CYLC1P35663 651 aaPredicted RBP14.99□□□□□ -0.01
CLK3-215ENST00000564353 CNNM4Q6P4Q7 775 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 MSANTD4Q8NCY6 345 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 JMJD4Q9H9V9 463 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 ROBO3Q96MS0 1386 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 AKR1B10O60218 316 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 ERLIN1O75477 346 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 ZBED6P86452 979 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 GALNT17Q6IS24 598 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 IFIH1Q9BYX4 1025 aaKnown RBP14.99□□□□□ -0.01
CLK3-215ENST00000564353 RABEP2Q9H5N1 569 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 BCAS3Q9H6U6 928 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 USP40Q9NVE5 1235 aa14.99□□□□□ -0.01
CLK3-215ENST00000564353 BCCIPQ9P287 314 aaKnown RBP eCLIP14.99□□□□□ -0.01
CLK3-215ENST00000564353 MEIS1O00470 390 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 LAD1O00515 517 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 AMPD3Q01432 767 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 SPA17Q15506 151 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 VWA3BQ502W6 1294 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 TDRD12Q587J7 1177 aaKnown RBP14.98□□□□□ -0.01
CLK3-215ENST00000564353 NFRKBQ6P4R8 1299 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 AK8Q96MA6 479 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 MTMR9Q96QG7 549 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 SALL4Q9UJQ4 1053 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 RAB21Q9UL25 225 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 DLEC1Q9Y238 1755 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 KRT83P78385 493 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 DDR1Q08345 913 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 KIF5AQ12840 1032 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 KRT79Q5XKE5 535 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 LZTS2Q9BRK4 669 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 DDX25Q9UHL0 483 aaKnown RBP14.98□□□□□ -0.01
CLK3-215ENST00000564353 CCDC66A2RUB6 948 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 ANKRD65E5RJM6 399 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 TRAF5O00463 557 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 PSMD14O00487 310 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 RASSF7Q02833 373 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 TMEM266Q2M3C6 531 aa14.98□□□□□ -0.01
CLK3-215ENST00000564353 LAMB1P07942 1786 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 BTAF1O14981 1849 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 POTEB3A0JP26 581 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 POTECB2RU33 542 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 KIF11P52732 1056 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 MEA1Q16626 185 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 FOXR1Q6PIV2 292 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 POTEBQ6S5H4 581 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 CACNA2D4Q7Z3S7 1137 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 KIAA1024Q9UPX6 916 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 ATP2B4P23634 1241 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 RBM5P52756 815 aaKnown RBP eCLIP14.97□□□□□ -0.01
CLK3-215ENST00000564353 USH1GQ495M9 461 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 RAD54LQ92698 747 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 HAS1Q92839 578 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 RBM17Q96I25 401 aaKnown RBP14.97□□□□□ -0.01
CLK3-215ENST00000564353 MS4A14Q96JA4 679 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 RIOX1Q9H6W3 641 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 DBNDD1Q9H9R9 158 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 PACSIN2Q9UNF0 486 aaPredicted RBP14.97□□□□□ -0.01
CLK3-215ENST00000564353 PCDHA13Q9Y5I0 950 aa14.97□□□□□ -0.01
CLK3-215ENST00000564353 ATP8B1O43520 1251 aa14.96□□□□□ -0.01
CLK3-215ENST00000564353 IL1R1P14778 569 aa14.96□□□□□ -0.01
CLK3-215ENST00000564353 CCDC40Q4G0X9 1142 aa14.96□□□□□ -0.01
CLK3-215ENST00000564353 SPATA31A6Q5VVP1 1343 aa14.96□□□□□ -0.01
CLK3-215ENST00000564353 ZSCAN29Q8IWY8 852 aaPredicted RBP14.96□□□□□ -0.01
CLK3-215ENST00000564353 MYO1AQ9UBC5 1043 aa14.96□□□□□ -0.01
CLK3-215ENST00000564353 G3V3G9 751 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 CAPN2P17655 700 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 USP14P54578 494 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 DCAF8Q5TAQ9 597 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 CENPPQ6IPU0 288 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 KIAA0825Q8IV33 1275 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 FAM114A1Q8IWE2 563 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 SERPINB13Q9UIV8 391 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 CCDC88AQ3V6T2 1871 aa14.96□□□□□ -0.02
CLK3-215ENST00000564353 SLC1A4P43007 532 aa14.95□□□□□ -0.02
CLK3-215ENST00000564353 UNC13DQ70J99 1090 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms