RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 NAT10Q9H0A0 1025 aaKnown RBP10.13□□□□□ -0.79
VPS39-207ENST00000563692 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS39-207ENST00000563692 PORCNQ9H237 461 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 PSTPIP2Q9H939 334 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 RIC8AQ9NPQ8 531 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 USP25Q9UHP3 1055 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 HPSEQ9Y251 543 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 PCDHA1Q9Y5I3 950 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 CENPFP49454 3210 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 MYH15Q9Y2K3 1946 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 RPTORQ8N122 1335 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 MYH8P13535 1937 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 FAM205CA6NFA0 338 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 SLC15A5A6NIM6 579 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 PLA2G6O60733 806 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 TXLNAP40222 546 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 STAT2P52630 851 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 MAP2K5Q13163 448 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 PLS1Q14651 629 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 CDC37Q16543 378 aaPredicted RBP10.12□□□□□ -0.79
VPS39-207ENST00000563692 MFSD14CQ5VZR4 134 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 DTHD1Q6ZMT9 781 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 RASGRP2Q7LDG7 609 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 NEK8Q86SG6 692 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 FBXO11Q86XK2 927 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 CNNM3Q8NE01 707 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 DPF3Q92784 378 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 CSRNP2Q9H175 543 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 PAK6Q9NQU5 681 aaPredicted RBP10.12□□□□□ -0.79
VPS39-207ENST00000563692 ANO10Q9NW15 660 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 SLC5A4Q9NY91 659 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 KIAA1468Q9P260 1216 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 FEM1BQ9UK73 627 aa10.12□□□□□ -0.79
VPS39-207ENST00000563692 MYH6P13533 1939 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 RBBP6Q7Z6E9 1792 aaKnown RBP10.11□□□□□ -0.79
VPS39-207ENST00000563692 MGAMO43451 1857 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 CCNT1O60563 726 aaKnown RBP10.11□□□□□ -0.79
VPS39-207ENST00000563692 CNMDO75829 334 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 PRKAR2AP13861 404 aaKnown RBP10.11□□□□□ -0.79
VPS39-207ENST00000563692 DSG3P32926 999 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 LONP1P36776 959 aaKnown RBP10.11□□□□□ -0.79
VPS39-207ENST00000563692 PRPHP41219 470 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 CCDC173Q0VFZ6 552 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 STX1AQ16623 288 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 INF2Q27J81 1249 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 QRICH1Q2TAL8 776 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 MORN1Q5T089 497 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 JAKMIP3Q5VZ66 844 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 DPP9Q86TI2 863 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 RNF214Q8ND24 703 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 RASGRP4Q8TDF6 673 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 TRIB2Q92519 343 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 SPATC1LQ9H0A9 340 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 BTBD7Q9P203 1132 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 CTDP1Q9Y5B0 961 aaPredicted RBP10.11□□□□□ -0.79
VPS39-207ENST00000563692 NR2E3Q9Y5X4 410 aa10.11□□□□□ -0.79
VPS39-207ENST00000563692 GREB1LQ9C091 1923 aaPredicted RBP10.1□□□□□ -0.79
VPS39-207ENST00000563692 VWA3AA6NCI4 1184 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 POLR2DO15514 142 aaKnown RBP10.1□□□□□ -0.79
VPS39-207ENST00000563692 STRNO43815 780 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 FOSP01100 380 aaPredicted RBP10.1□□□□□ -0.79
VPS39-207ENST00000563692 COPB2P35606 906 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 LETM2Q2VYF4 491 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 KRBA2Q6ZNG9 492 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 NECAB2Q7Z6G3 386 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 NCAPG2Q86XI2 1143 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 CEP57L1Q8IYX8 460 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 IQUBQ8NA54 791 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 ANKLE1Q8NAG6 615 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 SHCBP1Q8NEM2 672 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 FAM200AQ8TCP9 573 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 TBCKQ8TEA7 893 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 NUP88Q99567 741 aaPredicted RBP10.1□□□□□ -0.79
VPS39-207ENST00000563692 MOV10L1Q9BXT6 1211 aaKnown RBP10.1□□□□□ -0.79
VPS39-207ENST00000563692 MROH8Q9H579 483 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 PNMA2Q9UL42 364 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 PRR12Q9ULL5 1215 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 MRVI1Q9Y6F6 885 aa10.1□□□□□ -0.79
VPS39-207ENST00000563692 MARCH6O60337 910 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 PPP1R11O60927 126 aaPredicted RBP10.09□□□□□ -0.79
VPS39-207ENST00000563692 SMC2O95347 1197 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 SLC25A27O95847 323 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 ERCC3P19447 782 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 CLK2P49760 499 aaKnown RBP10.09□□□□□ -0.79
VPS39-207ENST00000563692 USP11P51784 963 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 TRIM32Q13049 653 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 AP3B2Q13367 1082 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 GRB14Q14449 540 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 LONRF3Q496Y0 759 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 ANO6Q4KMQ2 910 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 KIAA1755Q5JYT7 1200 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 FAM83BQ5T0W9 1011 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 POTEEQ6S8J3 1075 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 C4orf32Q8N8J7 132 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 USP6NLQ92738 828 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 KIFC2Q96AC6 838 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 ATG4CQ96DT6 458 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 AK8Q96MA6 479 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 RAB34Q9BZG1 259 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 CRISPLD2Q9H0B8 497 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms