RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ZPR1O75312 459 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 SIK1P57059 783 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 TMED8Q6PL24 325 aaPredicted RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 TMC4Q7Z404 712 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 MMTAG2Q9BU76 263 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 ZMYND12Q9H0C1 365 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 COL22A1Q8NFW1 1626 aaPredicted RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 ESYT3A0FGR9 886 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 MYMKA6NI61 221 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 PJA2O43164 708 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 HEXIM1O94992 359 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 GNA11P29992 359 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 CARSP49589 748 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 SKOR1P84550 965 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 GUCY2DQ02846 1103 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 ITPK1Q13572 414 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 SF3B3Q15393 1217 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 GLE1Q53GS7 698 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 PDXDC1Q6P996 788 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 CCDC155Q8N6L0 562 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 SLC44A5Q8NCS7 719 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 TBCKQ8TEA7 893 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 BAP1Q92560 729 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 ANKS1AQ92625 1134 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 TMEM47Q9BQJ4 181 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 POLD4Q9HCU8 107 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 A6NNZ2 444 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 GLI1P08151 1106 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 GUCY2FP51841 1108 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 TUBB8Q3ZCM7 444 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 COBLL1Q53SF7 1204 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 UNC13DQ70J99 1090 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 POTEDQ86YR6 584 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 BIN2Q9UBW5 565 aaPredicted RBP15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 TSKSQ9UJT2 592 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 PALM3A6NDB9 673 aaPredicted RBP15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 KIAA0754O94854 1291 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 GUCY2CP25092 1073 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 TNFRSF8P28908 595 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 PAK2Q13177 524 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 LRRC41Q15345 812 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 LARP4BQ92615 738 aaKnown RBP15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 TSG101Q99816 390 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 RREB1Q92766 1687 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 TAF1P21675 1872 aa15.44■□□□□ 0.06
VPS9D1-202ENST00000561976 PHLPP1O60346 1717 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 ZSCAN5CA6NGD5 496 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 FAM153BP0C7A2 387 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 RNASE9P60153 205 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 FAM153CQ494X1 144 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 SLC9C1Q4G0N8 1177 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 B4GALNT4Q76KP1 1039 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 GUF1Q8N442 669 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 RNF10Q8N5U6 811 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 KAT2BQ92831 832 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 LZTS2Q9BRK4 669 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 SEC63Q9UGP8 760 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 FAM153AQ9UHL3 310 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 ABCA3Q99758 1704 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 PVALEFA0A1B0GWK0 134 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 FTCDO95954 541 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 IRX3P78415 501 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 LRRC63Q05C16 580 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 GRB10Q13322 594 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 FBXW10Q5XX13 1052 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 LUC7LQ9NQ29 371 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 BLOC1S4Q9NUP1 217 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 LAMB1P07942 1786 aa15.43■□□□□ 0.06
VPS9D1-202ENST00000561976 SSU72P8A0A1W2PR75 194 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 PALMO75781 387 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 RPS8P62241 208 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 CALCRLQ16602 461 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 CCDC40Q4G0X9 1142 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 SH3RF3Q8TEJ3 882 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 KRT12Q99456 494 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 RNF14Q9UBS8 474 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 MYH1P12882 1939 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 ENOX2Q16206 610 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 TMEM266Q2M3C6 531 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 ASTE1Q2TB18 679 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 SFMBT2Q5VUG0 894 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 SPTY2D1Q68D10 685 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 SUGP1Q8IWZ8 645 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 TMEM260Q9NX78 707 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 STK17AQ9UEE5 414 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 SAP30BPQ9UHR5 308 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 ABCB11O95342 1321 aa15.42■□□□□ 0.06
VPS9D1-202ENST00000561976 H0YHG0 523 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 ARID5AQ03989 594 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 SF3B2Q13435 895 aaKnown RBP15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 USP17L2Q6R6M4 530 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 REXO1Q8N1G1 1221 aaKnown RBP15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 OTUD6BQ8N6M0 293 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 TGFBRAP1Q8WUH2 860 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 RNPC3Q96LT9 517 aaKnown RBP15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 GDF3Q9NR23 364 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 ZNF233A6NK53 670 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 GUCY1A3Q02108 690 aa15.41■□□□□ 0.06
VPS9D1-202ENST00000561976 APBA1Q02410 837 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms