RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 MTRQ99707 1265 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 PARP14Q460N5 1801 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 IGLV3-22A0A075B6J6 115 aa23.97■■□□□ 1.43
CLN3-209ENST00000561689 ATP2A1O14983 1001 aa23.97■■□□□ 1.43
CLN3-209ENST00000561689 PLCG1P19174 1290 aa23.97■■□□□ 1.43
CLN3-209ENST00000561689 HOXA7P31268 230 aaPredicted RBP23.97■■□□□ 1.43
CLN3-209ENST00000561689 RNF207Q6ZRF8 634 aa23.97■■□□□ 1.43
CLN3-209ENST00000561689 SLFN12Q8IYM2 578 aa23.97■■□□□ 1.43
CLN3-209ENST00000561689 SMARCE1Q969G3 411 aa23.97■■□□□ 1.43
CLN3-209ENST00000561689 MSH4O15457 936 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 STAT3P40763 770 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 DCAF8L1A6NGE4 600 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 CAVIN2O95810 425 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 SARSP49591 514 aaKnown RBP23.96■■□□□ 1.43
CLN3-209ENST00000561689 IRX3P78415 501 aaPredicted RBP23.96■■□□□ 1.43
CLN3-209ENST00000561689 MOGSQ13724 837 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 PURBQ96QR8 312 aaKnown RBP23.96■■□□□ 1.43
CLN3-209ENST00000561689 TAAR1Q96RJ0 339 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 NUDT12Q9BQG2 462 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 BLZF1Q9H2G9 400 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 MAN1B1Q9UKM7 699 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 AGTPBP1Q9UPW5 1226 aa23.96■■□□□ 1.43
CLN3-209ENST00000561689 TBX3O15119 743 aa23.95■■□□□ 1.42
CLN3-209ENST00000561689 CELF2O95319 508 aaKnown RBP23.95■■□□□ 1.42
CLN3-209ENST00000561689 BAATQ14032 418 aaPredicted RBP23.95■■□□□ 1.42
CLN3-209ENST00000561689 UVSSAQ2YD98 709 aa23.95■■□□□ 1.42
CLN3-209ENST00000561689 NT5DC1Q5TFE4 455 aa23.95■■□□□ 1.42
CLN3-209ENST00000561689 IL31RAQ8NI17 732 aa23.95■■□□□ 1.42
CLN3-209ENST00000561689 SNX29Q8TEQ0 813 aa23.95■■□□□ 1.42
CLN3-209ENST00000561689 ASCC2Q9H1I8 757 aaPredicted RBP23.95■■□□□ 1.42
CLN3-209ENST00000561689 MAP3K20Q9NYL2 800 aaKnown RBP23.95■■□□□ 1.42
CLN3-209ENST00000561689 RPTORQ8N122 1335 aa23.95■■□□□ 1.42
CLN3-209ENST00000561689 PTPRFP10586 1907 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 DPYDQ12882 1025 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 CEP55Q53EZ4 464 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 KRT79Q5XKE5 535 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 LBX2Q6XYB7 198 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 SPATA20Q8TB22 786 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 ANP32BQ92688 251 aaKnown RBP23.94■■□□□ 1.42
CLN3-209ENST00000561689 CALML4Q96GE6 196 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 GBA2Q9HCG7 927 aaPredicted RBP23.94■■□□□ 1.42
CLN3-209ENST00000561689 BTBD7Q9P203 1132 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 SMC2O95347 1197 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 GRB10Q13322 594 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 PLA2G4DQ86XP0 818 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 SAMD3Q8N6K7 520 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 FAM20AQ96MK3 541 aa23.94■■□□□ 1.42
CLN3-209ENST00000561689 RTN4Q9NQC3 1192 aaKnown RBP23.94■■□□□ 1.42
CLN3-209ENST00000561689 EIF2AK2P19525 551 aaKnown RBP23.93■■□□□ 1.42
CLN3-209ENST00000561689 BMP6P22004 513 aa23.93■■□□□ 1.42
CLN3-209ENST00000561689 SNAPC2Q13487 334 aa23.93■■□□□ 1.42
CLN3-209ENST00000561689 CUL4BQ13620 913 aa23.93■■□□□ 1.42
CLN3-209ENST00000561689 FASTKD5Q7L8L6 764 aaKnown RBP23.93■■□□□ 1.42
CLN3-209ENST00000561689 PNMA5Q96PV4 448 aa23.93■■□□□ 1.42
CLN3-209ENST00000561689 NAT10Q9H0A0 1025 aaKnown RBP23.93■■□□□ 1.42
CLN3-209ENST00000561689 MKRN3Q13064 507 aaKnown RBP23.92■■□□□ 1.42
CLN3-209ENST00000561689 IQCB1Q15051 598 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 RMDN3Q96TC7 470 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 ACAD9Q9H845 621 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 GPAT2Q6NUI2 795 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 C2orf69Q8N8R5 385 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 CDK5RAP3Q96JB5 506 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 RABGAP1Q9Y3P9 1069 aa23.92■■□□□ 1.42
CLN3-209ENST00000561689 COL11A1P12107 1806 aaPredicted RBP23.92■■□□□ 1.42
CLN3-209ENST00000561689 UNCXA6NJT0 531 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 MEIS1O00470 390 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 GTPBP6O43824 516 aaPredicted RBP23.91■■□□□ 1.42
CLN3-209ENST00000561689 ARP10275 920 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 ITGB5P18084 799 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 HERVK_113P62684 666 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 FKBP1BP68106 108 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 SPIRE1Q08AE8 756 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 TKFCQ3LXA3 575 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 MB21D1Q8N884 522 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 PAGR1Q9BTK6 254 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 PLCB2Q00722 1185 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 MORC3Q14149 939 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 ECM1Q16610 540 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 NCAPH2Q6IBW4 605 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 DHX40Q8IX18 779 aaKnown RBP23.91■■□□□ 1.42
CLN3-209ENST00000561689 MXRA8Q9BRK3 442 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 CUEDC2Q9H467 287 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 A1CFQ9NQ94 594 aaKnown RBP23.91■■□□□ 1.42
CLN3-209ENST00000561689 PXMP2Q9NR77 195 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 KBTBD4Q9NVX7 518 aa23.91■■□□□ 1.42
CLN3-209ENST00000561689 LOC285556D6RIA3 1793 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 PGM5Q15124 567 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 ARHGEF16Q5VV41 709 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 PCNX4Q63HM2 1172 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 CYP39A1Q9NYL5 469 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 VAV3Q9UKW4 847 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 FRMPD4Q14CM0 1322 aa23.9■■□□□ 1.42
CLN3-209ENST00000561689 CCT6AP40227 531 aaKnown RBP23.89■■□□□ 1.42
CLN3-209ENST00000561689 MRPS9P82933 396 aaKnown RBP23.89■■□□□ 1.42
CLN3-209ENST00000561689 DHX8Q14562 1220 aaKnown RBP23.89■■□□□ 1.42
CLN3-209ENST00000561689 AOPEPQ8N6M6 819 aa23.89■■□□□ 1.42
CLN3-209ENST00000561689 GSDMAQ96QA5 445 aa23.89■■□□□ 1.42
CLN3-209ENST00000561689 PDCD2LQ9BRP1 358 aa23.89■■□□□ 1.42
CLN3-209ENST00000561689 BECN2A8MW95 431 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 MYCLP12524 364 aaPredicted RBP23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms